View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1104_low_50 (Length: 365)
Name: NF1104_low_50
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 28 - 358
Target Start/End: Complemental strand, 46986360 - 46986030
Alignment:
| Q |
28 |
cattagaatgatggaagagagtgttacttgttcaaatatttttcatcatctggtctcacattaagttctctatccactaattctgttagcaaacatctac |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46986360 |
cattagaatgatggaagagagtgttacttgttcaaatatttttcatcatctcgtctcacattaagttctctatccactaattctgttagcaaatatctac |
46986261 |
T |
|
| Q |
128 |
ataac--gcgctcttgcaaagtttggcatgaactaatttactcatttagattta-ttttttatgttgttctaaattttctgtctcttccaattatgaaag |
224 |
Q |
| |
|
|| | ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
46986260 |
atggctagcgctcttgcaaagtttggtatgaattaatttactcatttagatttatttttttatgttgttctaaattttctgtttcttccaattataaaag |
46986161 |
T |
|
| Q |
225 |
atttaatttgtattcataaaggtatttagtcttgtnnnnnnnnnnnnnnnnnnnnggtatttagtctattttgagcctttggctcctttctattcaccaa |
324 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46986160 |
attgaatttgtattcataaagatatttagtcttgt---aaaaaaaaaaaaaaaaaggtatttagtctattttgagcctttggctcctttctattcaccaa |
46986064 |
T |
|
| Q |
325 |
ttatttttattgctacaactacctattcttttct |
358 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
46986063 |
ttttttttattgctacaactacctattcttttct |
46986030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University