View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_51 (Length: 362)
Name: NF1104_low_51
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 3084894 - 3085211
Alignment:
| Q |
16 |
atcatcatacaactaccaatgtcacgaatacatgaatacaagatcctaccatataccagaatctacattcctatttttataagtataatgtttgatgaaa |
115 |
Q |
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| T |
3084894 |
atcatcatacaactaccaacgtcacgaatacatgaatacaagatcgtatcatataccagaatctacattcctatttttataagtataatgtttgatgaaa |
3084993 |
T |
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| Q |
116 |
caaaattatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaatgactctacaaggcatagcaaaagc |
215 |
Q |
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| T |
3084994 |
caaaattatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaatgattctacaagccatagcaaaagc |
3085093 |
T |
|
| Q |
216 |
aatagggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccga |
315 |
Q |
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| T |
3085094 |
aatagggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccga |
3085193 |
T |
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| Q |
316 |
aacactgatccaaatgat |
333 |
Q |
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| T |
3085194 |
aacactgatccaaatgat |
3085211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 121 - 332
Target Start/End: Original strand, 3093845 - 3094056
Alignment:
| Q |
121 |
ttatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaatgactctacaaggcatagcaaaagcaatag |
220 |
Q |
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| T |
3093845 |
ttatttttaatttgctcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatag |
3093944 |
T |
|
| Q |
221 |
ggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccgaaacac |
320 |
Q |
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| T |
3093945 |
agaggatggagagcctggaccaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacac |
3094044 |
T |
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| Q |
321 |
tgatccaaatga |
332 |
Q |
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| T |
3094045 |
cgatccaaatga |
3094056 |
T |
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