View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_55 (Length: 355)
Name: NF1104_low_55
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_55 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0202 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 5473 - 5352
Alignment:
| Q |
209 |
tagctgaatggttttgatactcacaattagaata----gagatctgattaatgtgatgattttgtataatttgaatgctgaacaaataatcaacttaccc |
304 |
Q |
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| T |
5473 |
tagctgaatggttttgatactcacaattagaatatatagagatctaattaatgtgatgattttgtataatttgaatgctgaacaaataatcaacttaccc |
5374 |
T |
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| Q |
305 |
atcccttcttcagaatcaatat |
326 |
Q |
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| T |
5373 |
atcccttcttcaaaatcaatat |
5352 |
T |
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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 31034995 - 31035055
Alignment:
| Q |
134 |
atttaccacttaatccttttttcattcacatttaccattctaaacaaataagatttggaga |
194 |
Q |
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| T |
31034995 |
atttaccacttaatccttttttgattcacatttaccattctaaacaaataagatttggaga |
31035055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 31035083 - 31035156
Alignment:
| Q |
251 |
attaatgtgatgattttgtataatttgaatgctgaacaaataatcaacttacccatcccttcttcagaatcaat |
324 |
Q |
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| T |
31035083 |
attaatgtgatgatattgtataattttaaagctgaacaaataatcaacttacttatcccttcttcaaaatcaat |
31035156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 31096665 - 31096576
Alignment:
| Q |
27 |
aatcactaacacagcatataatcattataaccagaaagaaaccaagatcactattattagctttataaagaattcatcagcaaacaagta |
116 |
Q |
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| T |
31096665 |
aatcactaacaccgcgtacaatcactataaccagaaagaaacccagatcactataattatcagtataaagaattcatcagcaaagaagta |
31096576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 30366253 - 30366189
Alignment:
| Q |
252 |
ttaatgtgatgattttgtataatttgaatgctgaacaaataatcaacttacccatcccttcttca |
316 |
Q |
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| T |
30366253 |
ttaatgtgatgatattgtataattttaaagctgaacaaataatcaacttactcatcccttcttca |
30366189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 30366324 - 30366282
Alignment:
| Q |
152 |
ttttcattcacatttaccattctaaacaaataagatttggaga |
194 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
30366324 |
ttttgattcacatttaccattctaaacaaataagatttagaga |
30366282 |
T |
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