View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_56 (Length: 348)
Name: NF1104_low_56
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 26 - 319
Target Start/End: Complemental strand, 31603400 - 31603107
Alignment:
| Q |
26 |
ctgttgcttgggacacaatttatactcctttctctgaaggtggtcttggactttgttcctcaaaaccgttaatgatgcggctatgttaaagttgaattgg |
125 |
Q |
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| T |
31603400 |
ctgttgcttgggacacaatttatactcctttctctgaaggtggtcttggactttgttcctcaaaaccgttaataatgcggctatgttaaagttgaattgg |
31603301 |
T |
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| Q |
126 |
gatttagtttttcaaactatcagtgagctgttttggttagagttagaacatcaaataataatgtctgtgcagtatctcaattttattagaagatttaact |
225 |
Q |
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| T |
31603300 |
gatttagtttttcaaactatcagtgagctgttttggttagagttagaacatcaaataataatgtctgtgcagtatctcaattttattagaagatttaact |
31603201 |
T |
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| Q |
226 |
tctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaac |
319 |
Q |
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| T |
31603200 |
tctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaac |
31603107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 26 - 319
Target Start/End: Complemental strand, 31605856 - 31605563
Alignment:
| Q |
26 |
ctgttgcttgggacacaatttatactcctttctctgaaggtggtcttggactttgttcctcaaaaccgttaatgatgcggctatgttaaagttgaattgg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||| |
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| T |
31605856 |
ctgttgcttgggacacaatttatactcctttctctgaaggtggtcttggactttgttcctcaaaaccgttgataatgtggctacgttaaagttgaattgg |
31605757 |
T |
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| Q |
126 |
gatttagtttttcaaactatcagtgagctgttttggttagagttagaacatcaaataataatgtctgtgcagtatctcaattttattagaagatttaact |
225 |
Q |
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| T |
31605756 |
gagttagtttttcaaactatcagtgagctgctttggttagagttaggacagccaataataatgtttctgcagtatcacaattttattagaagatttaact |
31605657 |
T |
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| Q |
226 |
tctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaac |
319 |
Q |
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| T |
31605656 |
tcaacaacttcataaggactttgaagaatcataattttgttttgaatgagaagctttagaaactaatctaaacatggcttaaaactatgaaaac |
31605563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 7990227 - 7990325
Alignment:
| Q |
221 |
taacttctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaac |
319 |
Q |
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| T |
7990227 |
taacttctacaactttaaaaggactttgaagaaccataaaattgttctgaataataagctctcaaaactaatctagagatggccttcaactatgaaaac |
7990325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 49779084 - 49779010
Alignment:
| Q |
221 |
taacttctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatcta |
295 |
Q |
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||||||||| ||||| | || |||||||||||| |||||| ||||| |||| | ||||||| |||||||||||| |
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| T |
49779084 |
taacttctaaaactttaaaaggactttgaagaagcataaaattgttctgaataataagctctcgaaactaatcta |
49779010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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