View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_57 (Length: 336)
Name: NF1104_low_57
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 99 - 327
Target Start/End: Complemental strand, 33784103 - 33783874
Alignment:
| Q |
99 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
198 |
Q |
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| T |
33784103 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
33784004 |
T |
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| Q |
199 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttca-nnnnnnnga |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33784003 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttcattttttttga |
33783904 |
T |
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| Q |
298 |
agtcagtcatcatctgatcaagtttcatct |
327 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33783903 |
agtcagtcatcatctgatcaagtttcatct |
33783874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 99 - 327
Target Start/End: Original strand, 1562254 - 1562483
Alignment:
| Q |
99 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1562254 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
1562353 |
T |
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| Q |
199 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttca-nnnnnnnga |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1562354 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttcattttttttga |
1562453 |
T |
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| Q |
298 |
agtcagtcatcatctgatcaagtttcatct |
327 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1562454 |
agtcagtcatcatctgatcaagtttcatct |
1562483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 23370862 - 23370815
Alignment:
| Q |
100 |
aatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacat |
147 |
Q |
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||||||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
23370862 |
aatgtgtgcatgtggtagccccctcttttgaaattctacagtatacat |
23370815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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