View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_59 (Length: 333)
Name: NF1104_low_59
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 29931973 - 29932295
Alignment:
| Q |
1 |
aaaagcatccctcccaccattggcgggacggctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatatttcagattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29931973 |
aaaagcatccctcccaccattggcgggacggctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatatttcagattaat |
29932072 |
T |
|
| Q |
101 |
caaacccatcaatcaaaattcttctatgtatcaagttacacttcactacaacacattgaattactagggaattaaattttcttttgttgtctcaacacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29932073 |
caaacccatcaatcaaaattcttctatgtatcaagttacacttcactacaacacatcgaattactagggaattaaattttcttttgttgtctcaacactc |
29932172 |
T |
|
| Q |
201 |
tcgttcctagtgggaataggctatggtaatttagcgtccagtccaaaagtaagtaaattctagtaaaaagttgttctagtcagaatcgaaacaagtgaat |
300 |
Q |
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|||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29932173 |
tcgttcctagcgggaataggctatggtaatttagtgttcggtccaaaagtaagtaaattctagtaaaaagttgttctagtcagaatcgaaacaagtgaat |
29932272 |
T |
|
| Q |
301 |
caataaattaccactaagaataa |
323 |
Q |
| |
|
|||||| |||||||||||||||| |
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| T |
29932273 |
caataagttaccactaagaataa |
29932295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 29934697 - 29934799
Alignment:
| Q |
1 |
aaaagcatccctcccaccattggcgggacggctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatatttcagattaat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| || || |||||||||| | ||||| |||| |||||| |
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| T |
29934697 |
aaaagcatccctcccaccattccagggaccgctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaaattaat |
29934796 |
T |
|
| Q |
101 |
caa |
103 |
Q |
| |
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||| |
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| T |
29934797 |
caa |
29934799 |
T |
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