View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_60 (Length: 329)
Name: NF1104_low_60
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 319
Target Start/End: Original strand, 39075785 - 39076099
Alignment:
| Q |
5 |
ttgttactttatattggacctataaactatgctttttctaccctgcaaatatacaataagaatcaaaacaaaatccagcacaaagccatgtattaattga |
104 |
Q |
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| T |
39075785 |
ttgttactttatattggacctataaactatgctttttctaccctgcaaatatacaataagaatcaaaacaaaatccagcacaaagccatgtattaattga |
39075884 |
T |
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| Q |
105 |
gcaaagtatatcacgaaataatacatgataataattaaatatatctagcagcattggttcgaaggaagtagtgaacccacttccaattgcttnnnnnnnn |
204 |
Q |
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| T |
39075885 |
gtaaagtatatcacgaaataatacatgataataattaaatatatctagcagcattggttcgaaggaagtagtgaacccacttccaattgcttaaaaaaca |
39075984 |
T |
|
| Q |
205 |
nnnnnnnnncaccaatgtaaatggttacaataaggagagaacataaataataccacaaagataaattttgtgtatcatcaaaatgtgtccatcttaatct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39075985 |
cataaaaaacaccaatgtaaatggttacaataaggagagaacataaataataccacaaagataaattttttgtatcatcaaaatgtgtccatcttaatct |
39076084 |
T |
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| Q |
305 |
tcccatgtcttcata |
319 |
Q |
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| T |
39076085 |
tcccatgtcttcata |
39076099 |
T |
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