View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_64 (Length: 315)
Name: NF1104_low_64
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 140 - 305
Target Start/End: Original strand, 43070153 - 43070318
Alignment:
| Q |
140 |
atatgttaactcttgtgtacatcatttgttaaaataaattatatatattgggaggaagggacgatagtcaccatgtgattataaacatgtattgaataag |
239 |
Q |
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| T |
43070153 |
atatgttaactcttgtgtacatcatttgttaaaataaattatatatattgggaggaagggacgatagtcaccatgtgattataaacatgtattgaataag |
43070252 |
T |
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| Q |
240 |
aattgttcacattacatcaggattttagagagttcatatatatccttcctagcctaatcagaataa |
305 |
Q |
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| T |
43070253 |
aattgttcacattacatcaggattttagagagttcatatatatccttcctagcctaatcaaaataa |
43070318 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 43069561 - 43069647
Alignment:
| Q |
7 |
gttaggtagaaggaaaaggaagtagcacactggttgaatcctgcatgcacctccggcatatataaaactcgttcgtaagctagtttatgccatca |
101 |
Q |
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| T |
43069561 |
gttaggtagaaggaaaaggaagtagcacactggttgaatcc----tgcacctccggc----ataaaactcgttcgtaagctagtttatgccatca |
43069647 |
T |
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