View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_65 (Length: 314)
Name: NF1104_low_65
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_65 |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 44804027 - 44803784
Alignment:
| Q |
1 |
taggatattaatcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44804027 |
taggatattaatcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtag |
44803928 |
T |
|
| Q |
101 |
gaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44803927 |
gaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctc |
44803828 |
T |
|
| Q |
201 |
aagggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44803827 |
aagggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
44803784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 44800173 - 44799935
Alignment:
| Q |
12 |
tcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagtt------ttgtttaattccctgttgcttatgca-tggtaggagg |
104 |
Q |
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|||||| |||||||||| ||||| |||||||||||| |||||||| || || |||| |||||||||||||| | ||||||||| |||||||||| |
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| T |
44800173 |
tcttttcctggttttttttattaaatttgtgtgatga-agatatcacaaaaatagttctttctttgtttaattccctatggcttatgcaatggtaggagg |
44800075 |
T |
|
| Q |
105 |
agattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagg |
204 |
Q |
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| T |
44800074 |
agattgagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagg |
44799975 |
T |
|
| Q |
205 |
gcgtcttacaaaatatcttccctttaggagtaaaatgtga |
244 |
Q |
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| T |
44799974 |
gcgtcataccaagtatcttccctttgtcagtaaaatgtga |
44799935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 44797022 - 44796894
Alignment:
| Q |
98 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
197 |
Q |
| |
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||||||||||||||||||||| | ||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||| || | ||||||||||| |
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| T |
44797022 |
taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttg |
44796923 |
T |
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| Q |
198 |
ctcaagggcgtcttacaaaatatcttccc |
226 |
Q |
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|||||||||||| |||||||| ||||||| |
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| T |
44796922 |
ctcaagggcgtcatacaaaatttcttccc |
44796894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 44792121 - 44791981
Alignment:
| Q |
104 |
gagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaag |
203 |
Q |
| |
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|||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||| | |||||||||||| | |||||||||||||||| |
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| T |
44792121 |
gagattgagattgatgctagagttttacgaataggaaaggctgtagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaag |
44792022 |
T |
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| Q |
204 |
ggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
244 |
Q |
| |
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|||||| ||| |||||| |||||||| |||||||||||| |
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| T |
44792021 |
ggcgtcataccaaatatattccctttgtaagtaaaatgtga |
44791981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 44783894 - 44783662
Alignment:
| Q |
12 |
tcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttt-tgtttaattccctgttgcttatgcatggtaggaggagattg |
110 |
Q |
| |
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|||||| ||||||| | |||||||||||||| ||| |||||||| ||||| |||| | ||||| ||| | | ||||||| || ||||| ||||||| |
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| T |
44783894 |
tcttttcctggtttcatatattagatttgtgtaatga-agatatcacaacaatagttaatttttaactccatatggcttatgtttgataggaagagattg |
44783796 |
T |
|
| Q |
111 |
agattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtct |
210 |
Q |
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|||| || || |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| | ||||||||||||||| || |||| |
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| T |
44783795 |
agatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtca |
44783696 |
T |
|
| Q |
211 |
tacaaaatatcttccctttaggagtaaaatgtga |
244 |
Q |
| |
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||| | ||||||| || ||| |||||||||||| |
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| T |
44783695 |
taccacatatctttccattactagtaaaatgtga |
44783662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 244
Target Start/End: Complemental strand, 44786761 - 44786615
Alignment:
| Q |
98 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
197 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||||||||||| | |||||||| ||||||||||||| ||||||||||| || | |||| |||||| |
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| T |
44786761 |
taggaggagattgagatcgatggcagagtcctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttg |
44786662 |
T |
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| Q |
198 |
ctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
244 |
Q |
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|||| ||||||| ||| |||||| | ||||||| |||||||||||| |
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| T |
44786661 |
ctcaggggcgtcataccaaatatataccctttatcagtaaaatgtga |
44786615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 44788440 - 44788293
Alignment:
| Q |
97 |
gtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagttttt |
196 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||| ||| |||| | |||||||||||||||||||| |||||||||||||| | |||| ||||| |
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| T |
44788440 |
gtaggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaattttt |
44788341 |
T |
|
| Q |
197 |
gctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
244 |
Q |
| |
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||||| || |||| ||| |||||| || |||||| | |||||||||| |
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| T |
44788340 |
gctcagggacgtcataccaaatatatttcctttatcactaaaatgtga |
44788293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 1921 - 2006
Alignment:
| Q |
67 |
ttttgtttaattccctgttgcttatgca-tggtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagct |
151 |
Q |
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|||||||||||||||| | ||||||| | ||||||||||||||| |||||||| | | ||||||| ||||||||||||| |||||| |
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| T |
1921 |
ttttgtttaattccctatggcttatgtaatggtaggaggagattcagattgataccaaggttctatgagtaggaaaggctgtagct |
2006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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