View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_66 (Length: 306)
Name: NF1104_low_66
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 39 - 277
Target Start/End: Original strand, 14166233 - 14166471
Alignment:
| Q |
39 |
ataaaccaaaacatcacaactttaagtcttgattaaactattaagcacaagctccatcaagagaagggaaaaactcattcctctttccccaagagagtga |
138 |
Q |
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| T |
14166233 |
ataaaccaaaacatcacaactttaagtcttgattaaactattaagcacaagctccatcaagagaagggaaaaactcattcctctttccccaagagagtga |
14166332 |
T |
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| Q |
139 |
gaagaaacttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtc |
238 |
Q |
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| T |
14166333 |
gaagaaacttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtc |
14166432 |
T |
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| Q |
239 |
atgctgagctctgctcacaatcacacgggtgagcgcatc |
277 |
Q |
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| T |
14166433 |
atgctgagctctgctcacaatcacacgggtcagcgcatc |
14166471 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 5181766 - 5181674
Alignment:
| Q |
122 |
tttccccaagagagtgagaagaaacttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgtagta |
214 |
Q |
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| T |
5181766 |
tttccccaaaagagtgaggatgaacttcttgtagtcccctgaggtttccttggaaacttcatcttcaagatgaacactgtttctcttgtagta |
5181674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 5246431 - 5246335
Alignment:
| Q |
115 |
attcctctttccccaagagagtgagaagaaacttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgta |
211 |
Q |
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| T |
5246431 |
attcttctttccccatcagagtaaggagaaatttcttgtaatctcctgaagtttttttggccactgcatgctcaagttggacactatttctcttgta |
5246335 |
T |
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