View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_67 (Length: 302)
Name: NF1104_low_67
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_67 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 3084153 - 3084444
Alignment:
| Q |
11 |
cacagagcatacttgagtcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcag |
110 |
Q |
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| T |
3084153 |
cacagggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcag |
3084252 |
T |
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| Q |
111 |
cacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtc |
210 |
Q |
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| T |
3084253 |
gacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtc |
3084352 |
T |
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| Q |
211 |
tccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccgtgagcggtgcagccttcacca |
302 |
Q |
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| T |
3084353 |
tccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccgtgagcggtgcagccttcacca |
3084444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 3093033 - 3093303
Alignment:
| Q |
11 |
cacagagcatacttgagtcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcag |
110 |
Q |
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| T |
3093033 |
cacagggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcag |
3093132 |
T |
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| Q |
111 |
cacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtc |
210 |
Q |
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| T |
3093133 |
cacatcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagataacccaatgaactctgtttatgtcccatc |
3093232 |
T |
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| Q |
211 |
tccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccg |
281 |
Q |
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| T |
3093233 |
tccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccg |
3093303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 45938961 - 45939005
Alignment:
| Q |
149 |
gatcaacctttggtaggacaaggaatgtcagataatccaatgaac |
193 |
Q |
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| T |
45938961 |
gatcagcctttggtaggtcaagggatggcagataatccaatgaac |
45939005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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