View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_low_69 (Length: 292)

Name: NF1104_low_69
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_low_69
NF1104_low_69
[»] chr3 (13 HSPs)
chr3 (16-270)||(22616055-22616309)
chr3 (106-269)||(22621729-22621892)
chr3 (66-270)||(22010285-22010492)
chr3 (66-270)||(22186451-22186658)
chr3 (148-236)||(21936689-21936777)
chr3 (100-270)||(22034014-22034187)
chr3 (100-270)||(22113877-22114050)
chr3 (100-226)||(30990130-30990256)
chr3 (148-240)||(18967811-18967903)
chr3 (150-270)||(22178955-22179075)
chr3 (107-270)||(22104218-22104381)
chr3 (169-270)||(21945190-21945294)
chr3 (141-238)||(22649005-22649102)
[»] chr1 (3 HSPs)
chr1 (65-240)||(34988679-34988854)
chr1 (148-240)||(34979705-34979797)
chr1 (148-240)||(34975047-34975139)
[»] chr7 (2 HSPs)
chr7 (100-206)||(873413-873519)
chr7 (100-206)||(1234690-1234796)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 22616309 - 22616055
Alignment:
Q  16 atcttcatctaaccaaaaattcaaaactgcaaaagtgagaggttgactgcaatggctgaaatggctgtgagtttggctattcagcaactgcttccactgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616309 atcttcatctaaccaaaaattcaaaactgcaaaagtgagaggttgactgcaatggctgaaatggctgtgagtttggctattcagcaactgcttccactgt 22616210  T
Q  116 taaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616209 taaggaaagaagccaatttgcttggaggcatccacaaggaatttgcatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaa 22616110  T
Q  216 aagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaag 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616109 aagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaag 22616055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 269
Target Start/End: Complemental strand, 22621892 - 22621729
Alignment:
Q  106 cttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaagg 205  Q
    |||||| |||||||| ||||||||| ||||||    ||||| ||||| ||||||| | |||| |||||||||||||||||||||||||| ||||||||||    
T  22621892 cttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaagg 22621793  T
Q  206 acgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaa 269  Q
    | || || | ||||||||||| ||||| ||| |||    ||||||| ||||||| |||||||||    
T  22621792 atgctgatagaagagctgcaggtgaagaagataacactagtgaaggagtcaaaacatgggtgaa 22621729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 270
Target Start/End: Original strand, 22010285 - 22010492
Alignment:
Q  66 aatggctgaaatggctgtgagtttggctattcagcaactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatac 165  Q
    |||||| ||||||| ||||  ||| | |||| | ||||| |||||| |||||||| ||||| ||||  || |  ||||||| |||||||| |||| | ||    
T  22010285 aatggccgaaatggttgtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggagtttgcaaac 22010384  T
Q  166 atcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatat 262  Q
    || |||| |||||| |||||||| ||||||||||| ||||| || || |||||||| ||   || |||||||||||||    ||||||| ||||||||||    
T  22010385 attaaagctgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaaggagacaactcaagtgaaggagtcaaaatat 22010484  T
Q  263 gggtgaag 270  Q
    ||||||||    
T  22010485 gggtgaag 22010492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 270
Target Start/End: Original strand, 22186451 - 22186658
Alignment:
Q  66 aatggctgaaatggctgtgagtttggctattcagcaactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatac 165  Q
    |||||| ||||||| ||||  ||| | |||| | ||||| |||||| |||||||| ||||| ||||  || |  ||||||| |||||||| |||| | ||    
T  22186451 aatggccgaaatggttgtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggattttgcaaac 22186550  T
Q  166 atcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatat 262  Q
    || |||| |||||| |||||||| ||||||||||| ||||| || || |||||||| ||   || |||||||||||||    ||||||| ||||||||||    
T  22186551 attaaagctgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaaggagacaactcaagtgaaggagtcaaaatat 22186650  T
Q  263 gggtgaag 270  Q
    ||||||||    
T  22186651 gggtgaag 22186658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 21936689 - 21936777
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggaga 236  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||| || || | ||||||||||| ||| |||||    
T  21936689 cacaaggaatttggagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagctgatggaga 21936777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 270
Target Start/End: Original strand, 22034014 - 22034187
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattcc 199  Q
    ||||| ||||||||||||| | ||||||||||  || |  ||||| | |||||||| || | | | || ||||||||||| |||||||| ||||||||||    
T  22034014 caactacttccactgttaacggaagaagccaagctgttgagaggcgttcacaaggagttcgcagagattaaagatgaactggaaagcattcaagcattcc 22034113  T
Q  200 ttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaag 270  Q
    | ||||| || || |||||||| ||   || |||||||||||||  | ||||||| ||||||||||||||||||    
T  22034114 tgaaggatgctgataaaagagcagcaggagctgaaggagacaacaccggtgaaggagtcaaaatatgggtgaag 22034187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 270
Target Start/End: Original strand, 22113877 - 22114050
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattcc 199  Q
    ||||| ||||||||||||||| ||||||||||  || |  ||||| | |||||||| || | | | || ||||||||||| |||||||| ||||||||||    
T  22113877 caactacttccactgttaagggaagaagccaagctgttgagaggcgttcacaaggagttcgcagagattaaagatgaactggaaagcattcaagcattcc 22113976  T
Q  200 ttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaag 270  Q
    | ||||| || || |||||||| ||   || ||||| |||||||  | ||||||| ||||||||||||||||||    
T  22113977 tgaaggatgctgataaaagagcagcaggagctgaagaagacaacaccagtgaaggagtcaaaatatgggtgaag 22114050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 30990256 - 30990130
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattcc 199  Q
    ||||| ||||||||||||||| ||||||||||| ||||  ||||  | ||||||||||||  | | || |||||||||||||||||||| ||||| || |    
T  30990256 caactacttccactgttaagggaagaagccaatctgctaagaggtgttcacaaggaattttcagatattaaagatgaacttgaaagcattcaagcctttc 30990157  T
Q  200 ttaaggacgccgaaaaaagagctgcag 226  Q
    |||| || || || |||||||||||||    
T  30990156 ttaaagatgctgataaaagagctgcag 30990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 18967903 - 18967811
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaac 240  Q
    ||||| ||||||||| |||| ||||||||||||||||| |||||||| || ||| |||| || || |||||||||| || |||||||||||||    
T  18967903 cacaacgaatttgaagacattaaagatgaacttgaaagtatccaagcctttcttcaggatgctgataaaagagctgtagctgaaggagacaac 18967811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 270
Target Start/End: Original strand, 22178955 - 22179075
Alignment:
Q  150 caaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaa 249  Q
    ||||||||||||| | || ||||||||| |||||||||||||||| ||||| || || || || | ||||||||||| ||| |||||||||    |||||    
T  22178955 caaggaatttgaagatattaaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagctgatggagacaacactagtgaa 22179054  T
Q  250 ggggtcaaaatatgggtgaag 270  Q
    || ||||||| ||||||||||    
T  22179055 ggagtcaaaacatgggtgaag 22179075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 270
Target Start/End: Original strand, 22104218 - 22104381
Alignment:
Q  107 ttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaagga 206  Q
    ||||| |||||||| | ||||||||  || |  ||||| | ||||||||||||| | || | |||||||||||||||||||||||||| ||||| || ||    
T  22104218 ttccattgttaagggatgaagccaagctgttgagaggcgttcacaaggaatttgcagaccttaaagatgaacttgaaagcatccaagccttcctcaaaga 22104317  T
Q  207 cgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaag 270  Q
     || || | ||||||||||| ||| || ||||||    ||||||| ||||||| ||||||||||    
T  22104318 tgctgatagaagagctgcagctgatggggacaacactagtgaaggagtcaaaacatgggtgaag 22104381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 21945190 - 21945294
Alignment:
Q  169 aaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcag---ttgaaggagacaacgtccgtgaaggggtcaaaatatggg 265  Q
    |||||||||||||||||||| ||||||||||| ||||| || || |||||||| ||||    ||||||||||| |  | ||||| | |||||||||||||    
T  21945190 aaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcaggaactgaaggagacaccaccagtgaaagagtcaaaatatggg 21945289  T
Q  266 tgaag 270  Q
    |||||    
T  21945290 tgaag 21945294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 22649102 - 22649005
Alignment:
Q  141 aggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagaca 238  Q
    |||||| ||||| ||||||| | |||| ||||||||||| || | ||||||||| | ||||||||| || || | ||||||||| | ||||| |||||    
T  22649102 aggcattcacaacgaatttgcaaacattaaagatgaactggagatcatccaagcctcccttaaggatgctgatagaagagctgccgctgaagaagaca 22649005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 34988679 - 34988854
Alignment:
Q  65 caatggctgaaatggctgtgagtttggctattcagcaactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaata 164  Q
    ||||||| |||||||| |||  ||| |||||| |||||||||||||| |||||| | ||||| ||||  | ||   |||  | ||||| ||||||| | |    
T  34988679 caatggcagaaatggcagtgtcttttgctattaagcaactgcttccattgttaacggaagaaaccaaactactgaaaggtgttcacaaagaatttgcaga 34988778  T
Q  165 catcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaac 240  Q
    ||| ||| ||||||| |||||||||||| | |||||| | || || || | ||||||||||| |||||||||||||    
T  34988779 cattaaatatgaactggaaagcatccaaaccttccttgaagatgctgatagaagagctgcagctgaaggagacaac 34988854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 34979705 - 34979797
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaac 240  Q
    ||||| ||||||| | |||| ||| ||||||| ||||||||  |||| |||||||| || || || | ||||||||||| |||||||||||||    
T  34979705 cacaaagaatttgcagacattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagctgcagctgaaggagacaac 34979797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 34975047 - 34975139
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaac 240  Q
    ||||| ||||||| | |||| ||| ||||||| |||||||| ||||| ||||| || ||  | || | ||||||||||| |||||||||||||    
T  34975047 cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaaggagacaac 34975139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 873519 - 873413
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttg-gaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattc 198  Q
    ||||| |||||||| |||||| ||||||||||  | |||| || | ||||||||||| |||| | |||| ||||||||||| ||||| || |||||||||    
T  873519 caactacttccactattaagggaagaagccaagct-cttgagaagtatccacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattc 873421  T
Q  199 cttaagga 206  Q
    ||||||||    
T  873420 cttaagga 873413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 1234796 - 1234690
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttg-gaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattc 198  Q
    ||||| |||||||| |||||| ||||||||||  | |||| || | ||||||||||| |||| | |||| ||||||||||| ||||| || |||||||||    
T  1234796 caactacttccactattaagggaagaagccaagct-cttgagaagtatccacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattc 1234698  T
Q  199 cttaagga 206  Q
    ||||||||    
T  1234697 cttaagga 1234690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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