View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_low_7 (Length: 692)

Name: NF1104_low_7
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_low_7
NF1104_low_7
[»] chr3 (8 HSPs)
chr3 (297-482)||(5241549-5241731)
chr3 (218-369)||(5187057-5187207)
chr3 (291-486)||(5242081-5242268)
chr3 (297-485)||(5186029-5186208)
chr3 (594-675)||(5186582-5186663)
chr3 (425-486)||(5186992-5187052)
chr3 (117-166)||(5187259-5187308)
chr3 (615-671)||(5241950-5242006)
[»] chr1 (1 HSPs)
chr1 (121-165)||(25218331-25218375)
[»] chr5 (1 HSPs)
chr5 (121-165)||(37803045-37803088)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 297 - 482
Target Start/End: Original strand, 5241549 - 5241731
Alignment:
Q  297 ctttttgtactttcatagaattttgtctaacttg-acaacctaaacacacgaatggtggtgttttgtacaaaactgacaaagctaatgttatgtttcttg 395  Q
    ||||| ||||||||||| |||||||||||||||| ||||| ||||| |||||||| |||||||||| |||||||||||||| |||||| ||||  | |||    
T  5241549 cttttcgtactttcataaaattttgtctaacttggacaacataaacccacgaatgttggtgttttgaacaaaactgacaaaactaatggtatgcgttttg 5241648  T
Q  396 tgccacaatggttcttaaccatatttggcaaattataaaaccctccattttttcccaagatttagcaacaaccttttatatggaata 482  Q
    | || |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  5241649 tccc-caatggtt-ttaaccatatttgacaaattataaaaccctccattttttcc--agatttagcaacaaccttttatatggaata 5241731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 218 - 369
Target Start/End: Complemental strand, 5187207 - 5187057
Alignment:
Q  218 gaaaaacaaaaatattcaccttttttctgctaagaattacacaagttaatgtctcaaaaattcagatcatttacatgctctttttgtactttcatagaat 317  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||  |||  |||||| | ||||||||||||||||| |||    
T  5187207 gaaaaacaaaaatattcacctttttcc-gctaagaattacacaagttaatgtctcaaaaattcgaatc-gttacataccctttttgtactttcataaaat 5187110  T
Q  318 tttgtctaactt-gacaacctaaacacacgaatggtggtgttttgtacaaaac 369  Q
    ||||||||| || |||||||||||| ||| |||  ||||||||||||||||||    
T  5187109 tttgtctaagttggacaacctaaacccacaaattttggtgttttgtacaaaac 5187057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 291 - 486
Target Start/End: Complemental strand, 5242268 - 5242081
Alignment:
Q  291 catgctctttttgtactttcatagaattttgtctaacttg-acaacctaaacac--acgaatggtggtgttttgtacaaaactgacaaagctaatgttat 387  Q
    ||||| ||||||||||||||||| |||||||||||||||| | ||||||||| |  || |||| |||||||||| ||||||||         ||||||||    
T  5242268 catgccctttttgtactttcataaaattttgtctaacttggagaacctaaacccccacaaatgttggtgttttgaacaaaact---------aatgttat 5242178  T
Q  388 gtttcttgtgccacaatggttcttaaccatatttggcaaattataaaaccctccattttttcccaagatttagcaacaaccttttatatggaatacaat 486  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || |  |||||||| ||||||||||||||||||||||    
T  5242177 gctttttgtgccacaatggttcttaaccatatttggcaaattataaaaccctctattttt--cccatttttagcaaaaaccttttatatggaatacaat 5242081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 297 - 485
Target Start/End: Original strand, 5186029 - 5186208
Alignment:
Q  297 ctttttgtactttcatagaattttgtctaacttga-caacctaaacacacgaatggtggtgttttgtacaaaactgacaaagctaatgttatgtttcttg 395  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||| |||| ||||| ||||||||         |||| ||||  | |||    
T  5186029 cttttcgtactttcatagaattttgcctaacttgaacaacctaaactcacgaatgttggtattttgaacaaaact---------aatgatatgcgttttg 5186119  T
Q  396 tgccacaatggttcttaaccatatttggcaaattataaaaccctccattttttcccaagatttagcaacaacc-ttttatatggaatacaa 485  Q
    |   |||||||||||||||||||||||||||||||||||||||||| |||||  || |||||||||||||||| |||||||||||||||||    
T  5186120 tctaacaatggttcttaaccatatttggcaaattataaaaccctcccttttt--cctagatttagcaacaacctttttatatggaatacaa 5186208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 594 - 675
Target Start/End: Complemental strand, 5186663 - 5186582
Alignment:
Q  594 ttttgaatcaacatgtcgcttcattttgattaggtttcaaccatcaaatccatttgctaaaaagttatatagagtaacacag 675  Q
    |||||||||||||||||||||||||||||||||||| |||| |  ||| |||||| ||||||||||||| | ||||||||||    
T  5186663 ttttgaatcaacatgtcgcttcattttgattaggttgcaacaaagaaagccatttcctaaaaagttataaatagtaacacag 5186582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 5187052 - 5186992
Alignment:
Q  425 aaattataaaaccctccattttttcccaagatttagcaacaaccttttatatggaatacaat 486  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  5187052 aaattataaaaccctccattttttccca-gatttagctacaaccttttatatggaatacaat 5186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 5187308 - 5187259
Alignment:
Q  117 tgaagtaaaacaattctaatttactattatgaaaattcaaagagaaactc 166  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  5187308 tgaagtaaaacgattctaatttactattttgaaaattcaaagagaaactc 5187259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 671
Target Start/End: Original strand, 5241950 - 5242006
Alignment:
Q  615 cattttgattaggtttcaaccatcaaatccatttgctaaaaagttatatagagtaac 671  Q
    ||||||||||||||| |||||||||||  ||||||||||||| ||||| | ||||||    
T  5241950 cattttgattaggttgcaaccatcaaagtcatttgctaaaaacttataaatagtaac 5242006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 25218331 - 25218375
Alignment:
Q  121 gtaaaacaattctaatttactattatgaaaattcaaagagaaact 165  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||    
T  25218331 gtaagacaactctaatttactattttgaaaattcaaagagaaact 25218375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 37803088 - 37803045
Alignment:
Q  121 gtaaaacaattctaatttactattatgaaaattcaaagagaaact 165  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||    
T  37803088 gtaaaacaactctaatttactattctgaaaattc-aagagaaact 37803045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University