View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_73 (Length: 285)
Name: NF1104_low_73
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 53 - 244
Target Start/End: Complemental strand, 18156458 - 18156268
Alignment:
| Q |
53 |
tgtgctgtcccgaacaaataggactgcaataaagtaagagacatatagagatagttatagctgaagttagatctatgcatgtttaataaatccaagtctt |
152 |
Q |
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| T |
18156458 |
tgtgctgtcccgaacaaataggactgcaataaagtaagagacatatagagatagttatagctgaagttagatctatgcatgtttaataaatccaagtctt |
18156359 |
T |
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| Q |
153 |
tttatgcactgcaatcatattctcaaattcgnnnnnnntaaataaattgtatannnnnnnctgattattttattttggatatcttcatctca |
244 |
Q |
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| T |
18156358 |
tttatgcactgcaatcatattctcaaattcgaaaaaaataaataaattgtata-ttttttctgattatttttttttggatatctttatctca |
18156268 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 1904432 - 1904306
Alignment:
| Q |
117 |
agttagatctatgcatgtttaataaatccaagtctttttatgcactgcaatcatattctcaaattcgnnnnnnntaaataaattgtatannnnnnnctga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
1904432 |
agttagatctatgcatgtttaataaatccaagtctttttatgcactgcaatcatattctcaaattcgaaaaaaataaataaattgtata-ttttttctga |
1904334 |
T |
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| Q |
217 |
ttattttattttggatatcttcatctca |
244 |
Q |
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| T |
1904333 |
ttattttatttttgatatctttatctca |
1904306 |
T |
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