View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_low_74 (Length: 280)

Name: NF1104_low_74
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_low_74
NF1104_low_74
[»] chr4 (15 HSPs)
chr4 (186-270)||(8363421-8363505)
chr4 (184-266)||(36243517-36243599)
chr4 (186-264)||(56156935-56157013)
chr4 (186-266)||(26495122-26495202)
chr4 (186-265)||(26496346-26496425)
chr4 (186-266)||(36244803-36244883)
chr4 (186-270)||(56157528-56157612)
chr4 (177-256)||(20620130-20620209)
chr4 (186-265)||(52137426-52137505)
chr4 (186-252)||(20625554-20625620)
chr4 (196-267)||(669680-669751)
chr4 (180-268)||(40723221-40723310)
chr4 (180-265)||(52138832-52138916)
chr4 (199-267)||(2162622-2162690)
chr4 (197-265)||(28590942-28591010)
[»] chr7 (9 HSPs)
chr7 (180-266)||(41329506-41329592)
chr7 (186-265)||(41328219-41328298)
chr7 (186-270)||(39981317-39981401)
chr7 (186-266)||(32653463-32653543)
chr7 (186-236)||(32653733-32653783)
chr7 (202-263)||(35296857-35296918)
chr7 (186-241)||(669449-669504)
chr7 (180-250)||(26146759-26146829)
chr7 (186-268)||(38539671-38539753)
[»] chr3 (6 HSPs)
chr3 (186-266)||(13621994-13622074)
chr3 (186-263)||(49380993-49381070)
chr3 (186-265)||(13620920-13620999)
chr3 (186-260)||(49379701-49379775)
chr3 (221-263)||(14744098-14744140)
chr3 (187-267)||(20288259-20288339)
[»] chr1 (12 HSPs)
chr1 (186-266)||(14479551-14479631)
chr1 (186-265)||(51445590-51445669)
chr1 (186-266)||(28051643-28051723)
chr1 (186-265)||(14478266-14478345)
chr1 (186-266)||(28050321-28050401)
chr1 (186-266)||(51446879-51446959)
chr1 (200-267)||(40533639-40533706)
chr1 (200-266)||(40634727-40634793)
chr1 (186-268)||(15746800-15746882)
chr1 (186-268)||(48527534-48527616)
chr1 (186-267)||(12667310-12667391)
chr1 (199-267)||(24499690-24499758)
[»] scaffold0114 (1 HSPs)
scaffold0114 (180-279)||(38534-38633)
[»] chr5 (10 HSPs)
chr5 (186-268)||(11796569-11796651)
chr5 (177-256)||(23325903-23325982)
chr5 (186-252)||(23334017-23334083)
chr5 (186-235)||(11797600-11797649)
chr5 (183-267)||(8521252-8521336)
chr5 (187-267)||(32757826-32757906)
chr5 (196-267)||(10978314-10978385)
chr5 (186-267)||(32759083-32759164)
chr5 (186-254)||(8523794-8523862)
chr5 (186-270)||(41144550-41144634)
[»] chr8 (8 HSPs)
chr8 (30-131)||(45298855-45298962)
chr8 (186-265)||(9854916-9854995)
chr8 (200-269)||(38697170-38697239)
chr8 (204-267)||(42793717-42793780)
chr8 (177-267)||(38696299-38696389)
chr8 (186-241)||(28291295-28291350)
chr8 (186-264)||(9853567-9853645)
chr8 (181-267)||(28291400-28291486)
[»] chr2 (13 HSPs)
chr2 (186-266)||(28610022-28610102)
chr2 (186-265)||(4921095-4921174)
chr2 (186-266)||(4919827-4919907)
chr2 (186-270)||(28611284-28611368)
chr2 (187-269)||(8321276-8321358)
chr2 (200-267)||(19397544-19397611)
chr2 (184-267)||(19398835-19398918)
chr2 (209-263)||(45699523-45699577)
chr2 (186-267)||(2276281-2276362)
chr2 (186-267)||(34147136-34147217)
chr2 (197-267)||(34512825-34512895)
chr2 (186-267)||(34148395-34148476)
chr2 (225-270)||(45699568-45699613)
[»] scaffold0219 (2 HSPs)
scaffold0219 (186-270)||(6895-6979)
scaffold0219 (186-267)||(8225-8306)
[»] chr6 (2 HSPs)
chr6 (186-265)||(11722786-11722865)
chr6 (216-256)||(21777530-21777570)
[»] scaffold0011 (2 HSPs)
scaffold0011 (186-268)||(128625-128707)
scaffold0011 (186-267)||(127433-127514)
[»] scaffold2071 (1 HSPs)
scaffold2071 (186-267)||(716-797)
[»] scaffold1251 (1 HSPs)
scaffold1251 (186-267)||(1120-1201)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 8363505 - 8363421
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctttg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8363505 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccctttg 8363421  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 36243517 - 36243599
Alignment:
Q  184 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36243517 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 36243599  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 56156935 - 56157013
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtc 264  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  56156935 cttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtc 56157013  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 26495122 - 26495202
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  26495122 cttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccc 26495202  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 26496425 - 26496346
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  26496425 cttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcc 26496346  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 36244883 - 36244803
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||    
T  36244883 cttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtccc 36244803  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 56157612 - 56157528
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctttg 270  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||||||||||||    
T  56157612 cttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccctttg 56157528  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 20620130 - 20620209
Alignment:
Q  177 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcaca 256  Q
    |||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||    
T  20620130 tttttttggcttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 20620209  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 52137426 - 52137505
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||||||||    
T  52137426 cttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcc 52137505  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 20625620 - 20625554
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaact 252  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||    
T  20625620 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 20625554  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 669751 - 669680
Alignment:
Q  196 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||||||||| || ||||| | | ||| ||||||||||| |||| | |||||||||||||||||||||||    
T  669751 catttggtcccccaattaattttcaattttcattttggtcccataattaataaaactcacattttggtccct 669680  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 40723221 - 40723310
Alignment:
Q  180 tattgacttaattggacatttggtcccctaaataattatg-agtttacattttggtcctataaattataaaactcacattttggtccctt 268  Q
    ||||| |||||| || ||||||||||||||| ||||| || | ||| ||||||||||| |||| | ||||||||||  ||||||||||||    
T  40723221 tattggcttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcatgttttggtccctt 40723310  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 52138916 - 52138832
Alignment:
Q  180 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    ||||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||| ||  ||||||| ||| || | |||||||||||    
T  52138916 tattggcttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaagac-cccattttggtcc 52138832  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 2162622 - 2162690
Alignment:
Q  199 ttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||| |||| ||||| | ||||| |||||| |||| |||| | |||||||||| ||||||||||||    
T  2162622 ttggtcctctaattaattttcagttttcattttagtcccataactaataaaactcatattttggtccct 2162690  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 28591010 - 28590942
Alignment:
Q  197 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||| |||||||||   || || ||||||||||| |||||| ||||||||||  |||||||||    
T  28591010 atttggtcccttaaataatttccagctttcattttggtcccataaataataaaactcatgttttggtcc 28590942  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 41329592 - 41329506
Alignment:
Q  180 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41329592 tattggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 41329506  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 41328219 - 41328298
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  41328219 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 41328298  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 39981317 - 39981401
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctttg 270  Q
    |||||||||||||||| ||| |||||||||| || |||||||||||||||| ||||||| ||||| |||||||||||||| ||||    
T  39981317 cttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtccttttg 39981401  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 32653463 - 32653543
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    |||||||||| |||| ||||| |||||||||||| |||||||||||||||  ||||||| |||||||||||||| ||||||    
T  32653463 cttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatttcggtccc 32653543  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 32653783 - 32653733
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcc 236  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  32653783 cttaattggacatttggtcccctaaataattatgtatttacattttggtcc 32653733  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 35296918 - 35296857
Alignment:
Q  202 gtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggt 263  Q
    |||| ||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||    
T  35296918 gtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggt 35296857  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 669504 - 669449
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 241  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  669504 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 669449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 26146829 - 26146759
Alignment:
Q  180 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaa 250  Q
    ||||| ||||||||||| ||||||||||||| |||||    |||| ||||||| ||||||||||| |||||    
T  26146829 tattggcttaattggacttttggtcccctaactaatttgttgttttcattttgatcctataaattttaaaa 26146759  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 38539671 - 38539753
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctt 268  Q
    |||||| || |||||| |||| ||| |||||   ||||| ||||||||||| |||||| ||||||||||  ||||||||||||    
T  38539671 cttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcatgttttggtccctt 38539753  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 13622074 - 13621994
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13622074 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 13621994  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 49381070 - 49380993
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggt 263  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  49381070 cttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggt 49380993  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 13620920 - 13620999
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||    
T  13620920 cttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggtcc 13620999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 49379701 - 49379775
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacatttt 260  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||    
T  49379701 cttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacatttt 49379775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 14744098 - 14744140
Alignment:
Q  221 gtttacattttggtcctataaattataaaactcacattttggt 263  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  14744098 gtttacattttggtctcataaattgtaaaactcacattttggt 14744140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 20288339 - 20288259
Alignment:
Q  187 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||| || ||||||||||||||| ||||| | ||||| ||||||| ||| |||| | ||||||||||  | |||||||||    
T  20288339 ttaataggccatttggtcccctaattaatttttagttttcattttgatcccataattaataaaactcatgtgttggtccct 20288259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 14479631 - 14479551
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  14479631 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccc 14479551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 51445590 - 51445669
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  51445590 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 51445669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 28051723 - 28051643
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  28051723 cttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccc 28051643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 14478266 - 14478345
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  14478266 cttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcc 14478345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 28050321 - 28050401
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||  ||||||||||||||    
T  28050321 cttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccc 28050401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 51446959 - 51446879
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||  ||||||| |||||| ||||||||||||||    
T  51446959 cttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccc 51446879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 40533706 - 40533639
Alignment:
Q  200 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||| ||||||  ||||||||||||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccct 40533639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 40634793 - 40634727
Alignment:
Q  200 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    |||||||||||||||||   ||||||||||||| ||| |||||| |||||||||||||||| |||||    
T  40634793 tggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacattttcgtccc 40634727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 15746882 - 15746800
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctt 268  Q
    |||||| || ||||||||||||||| |||||   | ||| ||||||||||| |||| | ||||||||||  ||||||||||||    
T  15746882 cttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtccctt 15746800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 48527534 - 48527616
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctt 268  Q
    ||||||||||  ||||||||||||| |||||    |||||||||||||||| |||| |  ||||| | |||||||||||||||    
T  48527534 cttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccctt 48527616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 12667391 - 12667310
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||||  ||| |||| |||||||||||| ||||| ||||||||||||| || |  ||||| | |||||| |||||||    
T  12667391 cttaattggatttttagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccct 12667310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 24499758 - 24499690
Alignment:
Q  199 ttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||||||||||||   ||||| ||||||||||  | || | ||||||||||| |||||||||||    
T  24499758 ttggtcccctaaataatttcaagttttcattttggtctcacaattaataaaactcacgttttggtccct 24499690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 38534 - 38633
Alignment:
Q  180 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctttgcttctcctc 279  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| || |||||    
T  38534 tattggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctc 38633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 11796569 - 11796651
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  11796569 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccctt 11796651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 23325903 - 23325982
Alignment:
Q  177 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcaca 256  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||    
T  23325903 tttttttggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 23325982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 23334083 - 23334017
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaact 252  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||    
T  23334083 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 23334017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 11797649 - 11797600
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11797649 cttaattggacatttggtcccctaaataattatgagtttacattttggtc 11797600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 8521252 - 8521336
Alignment:
Q  183 tgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||| || ||||||||||| ||| |||||   ||||| ||||||||||| |||| | ||||||||||  |||||||||||    
T  8521252 tgacttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccct 8521336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 32757826 - 32757906
Alignment:
Q  187 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||||| ||||||||||  |||||||||||    
T  32757826 ttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcatgttttggtccct 32757906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 10978385 - 10978314
Alignment:
Q  196 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||||||||| |||||   | ||| |||||||||||||||||| ||||||| ||| ||| |||||||    
T  10978385 catttggtcccctaattaatttccaattttcattttggtcctataaataataaaacccacgtttcggtccct 10978314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 32759164 - 32759083
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  |||||||||||    
T  32759164 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccct 32759083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 8523862 - 8523794
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactca 254  Q
    |||||| || ||||||||||||||| |||||   ||||| ||||||||||| |||| | ||||||||||    
T  8523862 cttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactca 8523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 41144634 - 41144550
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctttg 270  Q
    ||||||||||  ||||||||||||| |||||    |||| ||||||||||| ||||||| |||||   || ||||||||||||||    
T  41144634 cttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttg 41144550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 45298962 - 45298855
Alignment:
Q  30 gagtattgttgtccgtccacaaacaagccgtgatagttaggcatacttgca------acaccttaagtttcacaattgtgggaatataatgtgttgaatg 123  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||      ||||||||||||| | ||||||||||||||||||||||||||     
T  45298962 gagtattgttgtccgtccacaaacaagccgtgatagttagacatacttgcacctttgacaccttaagttttataattgtgggaatataatgtgttgaata 45298863  T
Q  124 agtgtatg 131  Q
    ||||||||    
T  45298862 agtgtatg 45298855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 9854995 - 9854916
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||  |||||||||||||    
T  9854995 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcc 9854916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 38697170 - 38697239
Alignment:
Q  200 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccttt 269  Q
    ||||||| ||||||||||| | ||||||||||||||  ||||||||||||||  ||||||||||||||||    
T  38697170 tggtcccttaaataattatcaatttacattttggtctcataaattataaaaccaacattttggtcccttt 38697239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 42793717 - 42793780
Alignment:
Q  204 cccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||||||||  |||||| |||||||||| ||||||| ||||| | ||||||||||||||    
T  42793717 cccctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccct 42793780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 38696299 - 38696389
Alignment:
Q  177 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||| ||| |||||| || ||||||||||||||| ||||| | ||||| ||||||||||  |||| | ||||||||||  |||||||||||    
T  38696299 ttttcttggcttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtccct 38696389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 28291295 - 28291350
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 241  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  28291295 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 28291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 9853567 - 9853645
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtc 264  Q
    |||||||| ||||| | |||  |||||||||||  ||||| |||||||||| ||||||| ||||||| | |||||||||    
T  9853567 cttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtc 9853645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 28291486 - 28291400
Alignment:
Q  181 attgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||| ||||||||||  ||| ||||||||||||||||| ||||| || |||||||| |||| |  ||||| | |||||| |||||||    
T  28291486 attggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccct 28291400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 28610022 - 28610102
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  28610022 cttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccc 28610102  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 4921174 - 4921095
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||||    
T  4921174 cttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcc 4921095  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 4919827 - 4919907
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 266  Q
    |||||||||||||||||||| |||||||||||||  |||||| |||||||| |||||||||||||  ||||||||||||||    
T  4919827 cttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccc 4919907  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 28611368 - 28611284
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctttg 270  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||| ||| |||||||||| ||||    
T  28611368 cttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtccttttg 28611284  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 8321358 - 8321276
Alignment:
Q  187 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccttt 269  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||| ||||||||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtcccttt 8321276  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 19397544 - 19397611
Alignment:
Q  200 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccct 19397611  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 19398918 - 19398835
Alignment:
Q  184 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    ||||||||||| | |||||| |||||||||||||   |||||||||||||||| ||||||| ||||||  ||||||||||||||    
T  19398918 gacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccct 19398835  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 45699523 - 45699577
Alignment:
Q  209 aaataattatgagtttacattttggtcctataaattataaaactcacattttggt 263  Q
    ||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttggt 45699577  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 2276281 - 2276362
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| ||||||||| | ||||||||||  |||||||||||    
T  2276281 cttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtccct 2276362  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 34147136 - 34147217
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||| || |||||||||||  |||||||| | ||||| ||||||||||| |||| | ||||||||||  |||||||||||    
T  34147136 cttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccct 34147217  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 34512825 - 34512895
Alignment:
Q  197 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||||||||||| ||||||  ||||| ||||||||||| |||| | ||||||||||  ||||| |||||    
T  34512825 atttggtcccctaattaattaccagttttcattttggtcccataattaataaaactcatgttttgatccct 34512895  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 34148476 - 34148395
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  |||||||||||    
T  34148476 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccct 34148395  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 45699568 - 45699613
Alignment:
Q  225 acattttggtcctataaattataaaactcacattttggtccctttg 270  Q
    |||||||||| | ||||||| ||||||||||||||| |||||||||    
T  45699568 acattttggttccataaattgtaaaactcacattttagtccctttg 45699613  T

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Target: scaffold0219 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 6895 - 6979
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctttg 270  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  |||||||||| ||||||    
T  6895 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggttcctttg 6979  T

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Target: scaffold0219; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 8306 - 8225
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||||| || ||||||||||||| ||||| |  |||||||||||||||| |||| |  |||||   ||||||||||||||    
T  8306 cttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccct 8225  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 11722786 - 11722865
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 265  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  11722786 cttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcc 11722865  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 21777570 - 21777530
Alignment:
Q  216 tatgagtttacattttggtcctataaattataaaactcaca 256  Q
    ||||||||||||||||||||| |||| || |||||||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcaca 21777530  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 128707 - 128625
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccctt 268  Q
    |||||| || ||||||||||| ||| ||||| | ||||| |||||||||||||| | | ||||||||||  ||||||||||||    
T  128707 cttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtccctt 128625  T

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Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 127433 - 127514
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||| || ||||||||||||||| |||||   ||||| | ||||||||| |||| | ||||||||||  |||||||||||    
T  127433 cttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccct 127514  T

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Target: scaffold2071 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 797 - 716
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||| || |||||||||| |||| |||||   ||||| ||||||||||| |||| | ||||||||||  |||||||||||    
T  797 cttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtccct 716  T

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Target: scaffold1251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 1201 - 1120
Alignment:
Q  186 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccct 267  Q
    |||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||| | ||||||||||  |||||||||||    
T  1201 cttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtccct 1120  T

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