View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_91 (Length: 262)
Name: NF1104_low_91
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_91 |
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| [»] scaffold0271 (1 HSPs) |
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| [»] scaffold0640 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 1042361 - 1042162
Alignment:
| Q |
41 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1042361 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
1042262 |
T |
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| Q |
141 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
240 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1042261 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
1042162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 41193426 - 41193227
Alignment:
| Q |
41 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
140 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41193426 |
aaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
41193327 |
T |
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| Q |
141 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
240 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41193326 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
41193227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 41200682 - 41200483
Alignment:
| Q |
41 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
140 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41200682 |
aaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
41200583 |
T |
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| Q |
141 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
240 |
Q |
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| T |
41200582 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
41200483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 41 - 226
Target Start/End: Complemental strand, 41408540 - 41408355
Alignment:
| Q |
41 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
140 |
Q |
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||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
41408540 |
aaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcggattca |
41408441 |
T |
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| Q |
141 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
226 |
Q |
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| T |
41408440 |
acagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
41408355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 33323952 - 33323753
Alignment:
| Q |
41 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
140 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33323952 |
aaaccgagatattcgcggttgaagggttgaaatcaaacctgcatcattccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
33323853 |
T |
|
| Q |
141 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
240 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323852 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
33323753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 22915 - 23100
Alignment:
| Q |
41 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
140 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
22915 |
aaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcggattca |
23014 |
T |
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| Q |
141 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
226 |
Q |
| |
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|||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
23015 |
acagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
23100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 2443 - 2615
Alignment:
| Q |
58 |
gttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattcaacagaaaatggtcaaag |
157 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |
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| T |
2443 |
gttgaagggttgaaatcaaacctgcagtagtccaacaatcaacagtggtttgactttcaaacaaaatatgccccttggattcaacagaaaatgcgcaaag |
2542 |
T |
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| Q |
158 |
ctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcg |
230 |
Q |
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|||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
2543 |
ctcacagtttatcggacaggaaaatacattgcaattttgaagagcatcttattgcattattacaacaatctcg |
2615 |
T |
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