View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_high_10 (Length: 380)
Name: NF11050_high_10
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 4187023 - 4187197
Alignment:
| Q |
101 |
cctaattggggtgagagggttttgtttgtaattgctagtttttctgtgactggtattcaacatgttcagttcactttgaatcatttttctgcaagtgtct |
200 |
Q |
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| T |
4187023 |
cctaattggggtgagagagttttgtttgtaattgctagtttttctgtgactggtattcaacatgttcagttcactttcaatcatttttctgcaagtgtct |
4187122 |
T |
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| Q |
201 |
atattggtcaaccaacatcccatgattggtttgagaagcaaactagtgggactcttgatgtcgagtctccttctt |
275 |
Q |
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| T |
4187123 |
atattggtcaaccaacatcgcatgattggtttgagaagcaaactagtgggactcttgatgtcgagtctccttctt |
4187197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 342
Target Start/End: Original strand, 4196055 - 4196296
Alignment:
| Q |
101 |
cctaattggggtgagagggttttgtttgtaattgctagtttttctgtgactggtattcaacatgttcagttcactttgaatcatttttctgcaagtgtct |
200 |
Q |
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| T |
4196055 |
cctaattggggtgagagggttttatttgtgcttgctagtttttgtgtgactgggattcaacatgttcagtttactttgaatcatttttcggctagtgttt |
4196154 |
T |
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| Q |
201 |
atattggtcaaccaacatcccatgattggtttgagaagcaaactagtgggactcttgatgtcgagtctccttcttagatggattggtttcatgggggttt |
300 |
Q |
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| T |
4196155 |
atgttggtccaccgacggctcatgattggtttgagaagcaagctcatggaactcttgatgtgaagtgttcttcttggatggattggtttcatggtggttt |
4196254 |
T |
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| Q |
301 |
gcgatttcagattgaacaccacctgtttccgtggcttccacg |
342 |
Q |
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| T |
4196255 |
gcagtttcagattgagcatcatttgtttccgcgtcttccacg |
4196296 |
T |
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