View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11050_high_11 (Length: 294)
Name: NF11050_high_11
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 6921186 - 6921378
Alignment:
| Q |
3 |
agcttttcccctttttctttcaaatttatgatggctgcatcttcattttcatattctccatcttcaaaactatgtttgatcttccccctcttcctttaca |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921186 |
agcttttcccctttttctctcaaatttatgatggctgcatcttcattttcatattctccatcttcaaaactatgtttgatcttccccctcttcctttaca |
6921285 |
T |
|
| Q |
103 |
caacccaacaaaccctccctttctataaactcatttgaatcctcaaatcccaaccccatctcagctcaatctttgagttccctcatatatatc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6921286 |
caacccaacaaaccctccctttctataaactcatttgaatcctcaaatcccaaccccatctcagctcaatctttgagttcccccatatatatc |
6921378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 43616513 - 43616603
Alignment:
| Q |
198 |
atatccacacaaa-ccatattttcaaatcacttctttttcacccaccaactatttgtctatttgtttctaaaactttctccattcatctca |
287 |
Q |
| |
|
||||||||||||| ||||||||| | ||||| | |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
43616513 |
atatccacacaaatccatatttttagatcacatggttttcacccaccaactatttatctttttgtttctaaaactttctccactcatctca |
43616603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University