View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11050_high_12 (Length: 282)
Name: NF11050_high_12
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 43842721 - 43842983
Alignment:
| Q |
1 |
tcactaaaatttagcaaaatcaagcacaagagattaattgtgaaacacatggaagaaactacggagagattatcaactaagaaagaagagaaaacaatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43842721 |
tcactaaaatttagcaaaatcaagcacaagagattaattgtgaaacacatggaagaaactacggagagattatcaactaagaaagaagagaaaacaatga |
43842820 |
T |
|
| Q |
101 |
ctttctatgtttaccatccatgctattgtcttgaagaaattttcaagacttttttgaggtgttttggtattgagtccacccaaaccaaagaagaagaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43842821 |
ctttctatgtttaccatccatgctattgtcttgaagaaattttcaagacttttttgaggtgttttggtattgagtccacgcaaaccaaagaagaagaaga |
43842920 |
T |
|
| Q |
201 |
ttcatcaacatcactactcaaacctcatgcatgtgcatgtgcatctgattctaatgtagccct |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43842921 |
ttcatcaacatcactactcaaacctcatgcatgtgcatgtgcatctgattctaatgtagccct |
43842983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University