View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11050_high_2 (Length: 695)
Name: NF11050_high_2
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_high_2 |
 | |
|
| [»] scaffold0684 (1 HSPs) |
| | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 592; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 676
Target Start/End: Complemental strand, 21493593 - 21492918
Alignment:
| Q |
1 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493593 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
21493494 |
T |
|
| Q |
101 |
tctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattat--cacaatttccatgcatgcatagat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| || |
|
|
| T |
21493493 |
tctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatatcacaatttccatgcatgcatacat |
21493394 |
T |
|
| Q |
199 |
aacgtatacgtagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaa |
298 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493393 |
aacgtaca--tagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaa |
21493296 |
T |
|
| Q |
299 |
ccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaattgtt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
21493295 |
ccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggaccattgttgttagtggaagcaaccatcaattgtt |
21493196 |
T |
|
| Q |
399 |
tagagagagggtcatagattatacttactttgactaatgacccacttaccttattccatggtgttgtcctgcgggaaattaaagagttaacattaattcc |
498 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21493195 |
tagagagagggtcatagattatatttactttgactaatgacccacttaccttattccatgttgttgtcctgcgggaaattaaagagttaacatcaattcc |
21493096 |
T |
|
| Q |
499 |
aatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcccatcaactactccgagattt |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
21493095 |
aatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcacatcaactactccgagatat |
21492996 |
T |
|
| Q |
599 |
ggaccaatagagttgggaggaatgacggtgtcatgtgatgcaagaaagaagatgattccatcggctggcatataacct |
676 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21492995 |
ttacctccagagttgggaggaatgacggtgtcatgtgatgcaagaaagaagatgattccatcggctggcatataacct |
21492918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 131 - 664
Target Start/End: Complemental strand, 21483309 - 21482778
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggc----cataatagttattatcacaatttccatgcatgcatagataacgtatacgtagaagaccaatcatgcc |
226 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||| |||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
21483309 |
tcacaatctagtatggtcttttgtttagctagccatactagttattatcacaatctccatgcatgcatacataacgta------gaagtccaatcatgcc |
21483216 |
T |
|
| Q |
227 |
aaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggagaacag |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||||||||| |||||||| || |||||||||||||||| |||| || | ||||||||||| |
|
|
| T |
21483215 |
aaggtagaagtgaaagaccacgaatgaatgttttgcaattggcggccgccagatgtaactgttgcagataaaccaaccctaacgttctgtgggagaacag |
21483116 |
T |
|
| Q |
327 |
ctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaattgtttagagagagggtcatagattatacttac |
426 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| || ||||||||| |||||||||||| ||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
21483115 |
ctttcaaatcaacagcatgagcaacagttgaaatttgaccattgttgtcagtggcagcaacactcaatgtgttagatagagagtcataaattatacttac |
21483016 |
T |
|
| Q |
427 |
tttgactaatgacccacttaccttattccatggtgttgtcctgcgggaaattaaagagttaacattaattccaatatgtggatacttgggatcatactga |
526 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21483015 |
tttgactaatgacccactcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatacttgggatcatactga |
21482916 |
T |
|
| Q |
527 |
ttggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcccatcaactactccgagatttggaccaatagagttgggaggaatgacgg |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
21482915 |
ttggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgaacctccagagttgggaggaatgacgg |
21482816 |
T |
|
| Q |
627 |
tgtcatgtgatgcaagaaagaagatgattccatcggct |
664 |
Q |
| |
|
| || |||| ||||||||||||||||| |||||||||| |
|
|
| T |
21482815 |
tatcttgtggtgcaagaaagaagatgactccatcggct |
21482778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 131 - 664
Target Start/End: Complemental strand, 21489662 - 21489117
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattat----cacaatttccatgcatgcat----agataacgtatacgtagaagaccaatca |
222 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||| |||||| ||||||||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
21489662 |
tcacaatctaatatggacttttgtttagccatactagttattatatatcacaatctccatgcatgcatgcatacataacgta--cgtaggagaccaatca |
21489565 |
T |
|
| Q |
223 |
tgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggaga |
322 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||| || | |||| ||||||||| |||| || ||||||| |
|
|
| T |
21489564 |
tgccaaggttgaagtgaaagaccatgaatgaatctgttgcaattggcggccgacagctgtaactgttccagaaaaaccaaccctaacgttcggtgggaga |
21489465 |
T |
|
| Q |
323 |
acagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaattgtttagagagagggtcatagattatac |
422 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||| || ||||| ||||||||||| |||| ||||| |||||| ||| |||||||||||||| |
|
|
| T |
21489464 |
acagctttcaaatcaacaacatcagcaagagtagaaatttgaccattgctgttagtggcaacaacactcaatgtgttagagggagagtcatagattatac |
21489365 |
T |
|
| Q |
423 |
ttactttgactaatgacccacttaccttattccatggtgttgtcctgcgggaaattaaagagttaacattaattccaatatgtggatacttgggatca-- |
520 |
Q |
| |
|
||||||| || ||||||||||| ||| | |||||||||||||| ||| || |||| |||||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
21489364 |
ttactttcaccaatgacccactcaccctgttccatggtgttgtactggatgatattactgagttaacatcaattccaatatgtgcataattgggatcaaa |
21489265 |
T |
|
| Q |
521 |
----tactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcccatcaactactccgagatttggaccaatagagttggga |
616 |
Q |
| |
|
||| |||||||| | |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| | ||||||| || |
|
|
| T |
21489264 |
cactaacttattggcatgactatcaaactcgacaccaacaaattgattgaaagcatttttcccatcaactactccgagttttgaacccacagagttgtga |
21489165 |
T |
|
| Q |
617 |
ggaatgacggtgtcatgtgatgcaagaaagaagatgattccatcggct |
664 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
21489164 |
ggaattacggtgtcttgtggtgcaagaaagaagatgagtccatcggct |
21489117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 21483509 - 21483432
Alignment:
| Q |
103 |
tttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483509 |
tttagacatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatcacaat |
21483432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21483638 - 21483520
Alignment:
| Q |
1 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| || | || |||||||||||||| |
|
|
| T |
21483638 |
tcatgacttggttatttaggtaacatta------ggttaagcatggactttatttatagaaaaaccgaaacatatacatgatt---caagtatggtcttt |
21483548 |
T |
|
| Q |
101 |
tctttagccatactagttatcatcacaa |
128 |
Q |
| |
|
| |||||||||||||||||| ||||||| |
|
|
| T |
21483547 |
tgtttagccatactagttattatcacaa |
21483520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21489892 - 21489775
Alignment:
| Q |
1 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||| || | ||||||||||||||||| |
|
|
| T |
21489892 |
tcatgacttagctatttaggtaacatta------gtttaagcatgga-tttatttatagataaattgaaacatatac---atggttcaagtatggtcttt |
21489803 |
T |
|
| Q |
101 |
tctttagccatactagttatcatcacaa |
128 |
Q |
| |
|
||||||||||| |||||| ||||||| |
|
|
| T |
21489802 |
ggtttagccataccagttattatcacaa |
21489775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 21483472 - 21483389
Alignment:
| Q |
89 |
agtatggtcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483472 |
agtatggacttttgtttagccatactagttattatcacaa--------tctaatatggacttttgtttagccatactagttattatcacaat |
21483389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 21483352 - 21483303
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483352 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 21483395 - 21483346
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483395 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 21489705 - 21489656
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| |||||||||||||||| |
|
|
| T |
21489705 |
tcacaatctagtatggtctattgtttaggcatactagttattatcacaat |
21489656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 21483559 - 21483519
Alignment:
| Q |
140 |
agtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483559 |
agtatggtcttttgtttagccatactagttattatcacaat |
21483519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 573
Target Start/End: Original strand, 41047257 - 41047352
Alignment:
| Q |
478 |
taaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcatt |
573 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| |||||| | ||||||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41047257 |
taaagagttgacatcaattccaatatgttgatatgggggatcccatgtattggcataagtgtcaaactctacaccaacaaatttattaaaagcatt |
41047352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 41043911 - 41043874
Alignment:
| Q |
538 |
gtcaaactctacaccaacaaattgattgaaagcatttt |
575 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41043911 |
gtcaaactctacaccaacaaattgattgtaagcatttt |
41043874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 573
Target Start/End: Complemental strand, 41037869 - 41037834
Alignment:
| Q |
538 |
gtcaaactctacaccaacaaattgattgaaagcatt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41037869 |
gtcaaactctacaccaacaaattgattgtaagcatt |
41037834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 596
Target Start/End: Complemental strand, 41066124 - 41066001
Alignment:
| Q |
473 |
gaaattaaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcat |
572 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||| | ||||| |||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
41066124 |
gaaattaaagagttgacatcgattccaatatgtttcgtattgggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagtat |
41066025 |
T |
|
| Q |
573 |
tttgcccatcaactactccgagat |
596 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
41066024 |
tttttgaatcaactactccaagat |
41066001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 573
Target Start/End: Complemental strand, 41074145 - 41074111
Alignment:
| Q |
539 |
tcaaactctacaccaacaaattgattgaaagcatt |
573 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41074145 |
tcaaactctacaccaacaaattgattgtaagcatt |
41074111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 41089248 - 41089212
Alignment:
| Q |
539 |
tcaaactctacaccaacaaattgattgaaagcatttt |
575 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
41089248 |
tcaaactctacaccaataaattgattgaatgcatttt |
41089212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 571
Target Start/End: Complemental strand, 3294 - 3196
Alignment:
| Q |
473 |
gaaattaaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagca |
571 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| | ||| | ||||| | | |||| ||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
3294 |
gaaatcaaagagttgacatcaattccaatatgagcataatcaggatcccattcattgacataattgtcaaattctacaccaacaaatcgattgaaagca |
3196 |
T |
|
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Target: scaffold0163 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 4824 - 4922
Alignment:
| Q |
473 |
gaaattaaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagca |
571 |
Q |
| |
|
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|
|
| T |
4824 |
gaaatcaaagagttgacatcaattccaatatgagcataatcaggatcccattcattgacataattgtcaaattctacaccaacaaatcgattgaaagca |
4922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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