View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_high_3 (Length: 682)
Name: NF11050_high_3
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 1952267 - 1951851
Alignment:
| Q |
18 |
gtttagagtttgaactctgacccctgcatatactatacaatgtctctaacaagttattaggtcagttgttttattaaaattagtaatttatggccgaaga |
117 |
Q |
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| T |
1952267 |
gtttagagtttgaactcagactccggcatatactatataatgtctctaacaagttattaactcagatgttttgttaaaattagtaatttatggccgaaga |
1952168 |
T |
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| Q |
118 |
taaaatgttagagtacatctatttatacacatttcctttatttcaaaatttgcatcgtttgtcccttctcacaccttatatagcgatgatattatgattt |
217 |
Q |
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| T |
1952167 |
taaaattttagagtacatctatttatacacatttccttcatttcaaaatttgcatcgtttgtcccttgtcacaccttatatagcgatgatattatgattt |
1952068 |
T |
|
| Q |
218 |
tttgcaagcgcaagacatcttgtataaatgctttgagagaactcttcacaaaatatgctcaagtttctggacaaataatcaatactagcaaatcaacatt |
317 |
Q |
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| T |
1952067 |
tttgcaagcgcaagacatcttgtataaatgctttgagagaactcttcacaaaatatgctcaagtttctggacaaataatcaatactagcaaatcaacatt |
1951968 |
T |
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| Q |
318 |
gtatagtatatctctaacgtatagcagagagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaa |
417 |
Q |
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| T |
1951967 |
gtatagtatatctctaacgtatagcagacagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaa |
1951868 |
T |
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| Q |
418 |
agcatgctattatatat |
434 |
Q |
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| T |
1951867 |
agcatgctattatatat |
1951851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 564 - 661
Target Start/End: Complemental strand, 1951848 - 1951751
Alignment:
| Q |
564 |
ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattccttggaagtctgcagcagcttac |
661 |
Q |
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| T |
1951848 |
ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattccttggaagtctgcagcagcttac |
1951751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 13320610 - 13320567
Alignment:
| Q |
359 |
aagttatctgcttgaaaagcatctctactctctattgctgggag |
402 |
Q |
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| T |
13320610 |
aagttatctgcctggaaagcatctctcctctctattgctgggag |
13320567 |
T |
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