View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11050_high_5 (Length: 533)
Name: NF11050_high_5
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 30719250 - 30718748
Alignment:
| Q |
18 |
caactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719250 |
caactgacatatcctcttcttaaagaatctggaaatggaagcattgttttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatg |
30719151 |
T |
|
| Q |
118 |
cagcaagtaaaggtaatttggaaatggaagcattatgttatctttaaccttttgttgaaatataatggatacaaactaaaagatttattgtgttgttttc |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719150 |
cagcgagtaaaggtaatttggaaatggaagcattatgttatctttaaccttttgttgaaatataatggatacaaactaaaagatttattgtgttgttttc |
30719051 |
T |
|
| Q |
218 |
ttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaacacca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719050 |
ttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacataaggagcaactgtgtcgcaccctggtatacaaaaacacca |
30718951 |
T |
|
| Q |
318 |
cttgtggaacatgtaatgctctttcacaccttcaattattcattctgtggctttgtca-nnnnnnnnnatgaagattgtttgaatttgtaatgttcattt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
30718950 |
cttgtggaacatgtaatgctctttcacaccttcaattattcattctgtggctttgtcattttttttttatgaagattgtttgaatttgtaatgatcattt |
30718851 |
T |
|
| Q |
417 |
gatttggatgaaatgactgattggtcgttgtttaatcggaggtgtatggtatggtattcttctattttgttattgggttttttatagtaaataatgatct |
516 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
30718850 |
gatttgtatgaaatgactgattggtcattgtttaatcggaggtgtatggtatggtattcttctattttgttattgggttctttatagtaaataatgacct |
30718751 |
T |
|
| Q |
517 |
gtg |
519 |
Q |
| |
|
||| |
|
|
| T |
30718750 |
gtg |
30718748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 30706260 - 30706152
Alignment:
| Q |
25 |
catatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatgcagcaag |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||| || |
|
|
| T |
30706260 |
catatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgcatctctaataagtgtaggtactggaagcatctatgcagtgag |
30706161 |
T |
|
| Q |
125 |
taaaggtaa |
133 |
Q |
| |
|
||||||||| |
|
|
| T |
30706160 |
taaaggtaa |
30706152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 30706063 - 30705936
Alignment:
| Q |
214 |
tttcttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaac |
313 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| | |||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
30706063 |
tttcttcagccgcgatcaatcagctaacaaagaatcttgcttgtgaatgggcaaaagacaatataaggagcaactgtgttgcaccgtggtatacaaaaac |
30705964 |
T |
|
| Q |
314 |
accacttgtggaacatgtaatgctcttt |
341 |
Q |
| |
|
| | ||||||||||| |||||||||||| |
|
|
| T |
30705963 |
atcgcttgtggaacaggtaatgctcttt |
30705936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 30699432 - 30699317
Alignment:
| Q |
18 |
caactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||| |||||| || || | |
|
|
| T |
30699432 |
caactgacatatcctcttcttaaagaatctggaaatggaagcattgtattcaattcctctgttgcatctctgacacacgtaggttctggaacgatatacg |
30699333 |
T |
|
| Q |
118 |
cagcaagtaaaggtaa |
133 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
30699332 |
cagcatgtaaaggtaa |
30699317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 30699225 - 30699120
Alignment:
| Q |
211 |
tgttttcttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| || |||| ||| || ||||| || ||||||||||| |
|
|
| T |
30699225 |
tgttttcttcagctgcaatcaatcagctgaacaaaggtcttgcttgtgaatgggcaaaagacaatataaggatcaattgcgtcgcgccttggtatacaaa |
30699126 |
T |
|
| Q |
311 |
aacacc |
316 |
Q |
| |
|
|||||| |
|
|
| T |
30699125 |
aacacc |
30699120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 30708907 - 30708804
Alignment:
| Q |
18 |
caactgacatatcctcttcttaaagaatctggaaatg---gaagcattgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||| |||||| ||||| |||||| ||| | |
|
|
| T |
30708907 |
caactgacatatcctcttcttaaagaatctggaaatgcaagaagcattgtattcaattcctccgttgcatctctaacaagcataggttctggaaccatat |
30708808 |
T |
|
| Q |
115 |
atgc |
118 |
Q |
| |
|
|||| |
|
|
| T |
30708807 |
atgc |
30708804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 30790326 - 30790379
Alignment:
| Q |
28 |
atcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttg |
81 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
30790326 |
atcctcttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttg |
30790379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 30790525 - 30790641
Alignment:
| Q |
218 |
ttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaacacca |
317 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||| || ||||||||||| | ||||||||| |||||||| ||||| | ||| ||| || | ||| ||| |
|
|
| T |
30790525 |
ttcagctgcaattaatcagcttacaaaaaatctggcctgtgaatgggcaatagacaacataaggagcaattgtgttgtaccatgggcaaccagaacccca |
30790624 |
T |
|
| Q |
318 |
cttgtggaacatgtaat |
334 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
30790625 |
cttgtagaacatgtaat |
30790641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 23081116 - 23081162
Alignment:
| Q |
30 |
cctcttcttaaagaatctggaaatggaagcattgtgttcatttcctc |
76 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
23081116 |
cctcttctaaaacaatctggaaatggaagcattgtattcatatcctc |
23081162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 23057856 - 23057905
Alignment:
| Q |
33 |
cttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgg |
82 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||||| || |||||||| |
|
|
| T |
23057856 |
cttctaaaagaatctggatatggaagcatagtgttcatatcttctgttgg |
23057905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University