View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11050_high_8 (Length: 457)

Name: NF11050_high_8
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11050_high_8
NF11050_high_8
[»] chr6 (7 HSPs)
chr6 (131-406)||(22048674-22048947)
chr6 (19-103)||(22048358-22048442)
chr6 (363-401)||(844387-844425)
chr6 (166-224)||(31264968-31265026)
chr6 (356-401)||(20897781-20897826)
chr6 (363-401)||(34046667-34046705)
chr6 (361-401)||(5087165-5087205)
[»] chr2 (11 HSPs)
chr2 (131-406)||(44359059-44359332)
chr2 (19-103)||(44358743-44358827)
chr2 (346-401)||(14200924-14200979)
chr2 (354-401)||(8392302-8392349)
chr2 (363-406)||(20720216-20720259)
chr2 (363-406)||(42487645-42487688)
chr2 (363-401)||(18672471-18672509)
chr2 (363-401)||(20721206-20721244)
chr2 (363-401)||(21439809-21439847)
chr2 (354-406)||(18917473-18917525)
chr2 (361-401)||(44493164-44493204)
[»] chr3 (10 HSPs)
chr3 (132-406)||(13813829-13814101)
chr3 (19-103)||(4269744-4269828)
chr3 (346-401)||(54268814-54268869)
chr3 (346-401)||(15771863-15771918)
chr3 (354-401)||(27492594-27492641)
chr3 (363-406)||(29348547-29348590)
chr3 (363-401)||(117424-117462)
chr3 (363-401)||(32943266-32943304)
chr3 (356-401)||(34995811-34995856)
chr3 (363-399)||(50615061-50615097)
[»] scaffold0008 (6 HSPs)
scaffold0008 (131-343)||(79871-80081)
scaffold0008 (19-92)||(80338-80411)
scaffold0008 (19-92)||(80831-80904)
scaffold0008 (19-92)||(81324-81397)
scaffold0008 (19-92)||(81817-81890)
scaffold0008 (19-92)||(82310-82383)
[»] chr8 (11 HSPs)
chr8 (19-103)||(31393898-31393982)
chr8 (363-401)||(35369468-35369506)
chr8 (363-401)||(36018391-36018429)
chr8 (366-401)||(37706702-37706737)
chr8 (363-401)||(16473261-16473299)
chr8 (363-401)||(16477832-16477870)
chr8 (363-401)||(21135601-21135639)
chr8 (363-401)||(24451762-24451800)
chr8 (363-401)||(35863319-35863357)
chr8 (363-401)||(36063411-36063449)
chr8 (354-406)||(42024219-42024271)
[»] chr7 (10 HSPs)
chr7 (19-103)||(41550998-41551082)
chr7 (346-401)||(37540066-37540121)
chr7 (347-401)||(9633130-9633184)
chr7 (354-401)||(33625065-33625112)
chr7 (354-401)||(44167762-44167809)
chr7 (363-401)||(3495923-3495961)
chr7 (363-401)||(11396935-11396973)
chr7 (363-401)||(15130982-15131020)
chr7 (363-401)||(43083832-43083870)
chr7 (363-401)||(46044268-46044306)
[»] chr4 (9 HSPs)
chr4 (19-103)||(55044297-55044381)
chr4 (347-401)||(13604062-13604116)
chr4 (356-401)||(23473448-23473493)
chr4 (354-401)||(25422346-25422393)
chr4 (356-406)||(20650474-20650524)
chr4 (363-406)||(10321970-10322013)
chr4 (363-401)||(11670386-11670424)
chr4 (363-401)||(33689270-33689308)
chr4 (356-401)||(7490973-7491018)
[»] chr1 (13 HSPs)
chr1 (19-103)||(19146691-19146775)
chr1 (19-103)||(23674027-23674111)
chr1 (302-401)||(5430480-5430579)
chr1 (363-406)||(36367867-36367910)
chr1 (363-401)||(11999998-12000036)
chr1 (347-401)||(33707330-33707384)
chr1 (363-401)||(12368220-12368258)
chr1 (363-401)||(15053899-15053937)
chr1 (363-401)||(29231387-29231425)
chr1 (363-401)||(33708922-33708960)
chr1 (363-397)||(35188452-35188486)
chr1 (363-401)||(36248604-36248642)
chr1 (363-401)||(37986721-37986759)
[»] scaffold0627 (1 HSPs)
scaffold0627 (354-401)||(7212-7259)
[»] scaffold0148 (1 HSPs)
scaffold0148 (366-401)||(35553-35588)
[»] scaffold0097 (2 HSPs)
scaffold0097 (363-406)||(24054-24097)
scaffold0097 (363-401)||(25034-25072)
[»] chr5 (7 HSPs)
chr5 (346-401)||(27280433-27280488)
chr5 (363-401)||(2004224-2004262)
chr5 (363-401)||(4461939-4461977)
chr5 (356-398)||(14049725-14049767)
chr5 (363-401)||(26865683-26865721)
chr5 (363-401)||(34527298-34527336)
chr5 (363-401)||(38693443-38693481)
[»] scaffold0385 (1 HSPs)
scaffold0385 (363-401)||(9937-9975)
[»] scaffold0125 (1 HSPs)
scaffold0125 (363-401)||(21727-21765)
[»] scaffold0003 (1 HSPs)
scaffold0003 (363-401)||(239989-240027)
[»] scaffold0036 (1 HSPs)
scaffold0036 (356-401)||(17347-17392)
[»] scaffold0051 (1 HSPs)
scaffold0051 (353-401)||(52630-52678)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 131 - 406
Target Start/End: Original strand, 22048674 - 22048947
Alignment:
Q  131 acactctttatctggtaaatttttcaagagtcattccaaagatttagattattccaattcaaactcatgctaatgagtcaagattctcatgattccatta 230  Q
    ||||||||||||||||||||||| ||||||||  | |||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||     
T  22048674 acactctttatctggtaaattttccaagagtccgtacaaagatttacattattccacatcaaactcatgctaatgagtcaagattctcatgattccattc 22048773  T
Q  231 aacgagatcacgtggttatatatattcaaaggttaaatgtgtttttggtccaaatacaatatgggggtttctaagtttaattcttacttaatttttattg 330  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22048774 aacgagatcacgtggttata--tattcaaaggttaaatttgtttttggtccaaatacaatatgggggcttctaagtttaattcttacttaatttttattg 22048871  T
Q  331 cattattgggatttgcaaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  22048872 catttttgggatttgttaaatatatttacatttaatttaagtccctgctaaaacaacatttgtttaattatcttta 22048947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 22048442 - 22048358
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22048442 cgggtaacattgcattatctaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactgcgaat 22048358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 844425 - 844387
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  844425 taattttagtccctgctaaaacaaagtttgtttaattat 844387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 31265026 - 31264968
Alignment:
Q  166 ccaaagatttagattattccaattcaaactcatgctaatgagtcaagattctcatgatt 224  Q
    ||||||||||| | |||||||  ||||||||||||| ||||||||||||||||| ||||    
T  31265026 ccaaagatttaaaatattccacatcaaactcatgctcatgagtcaagattctcacgatt 31264968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 20897781 - 20897826
Alignment:
Q  356 ttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||    
T  20897781 ttacttttaattttagtccctactaaaacaaagtttgtttaattat 20897826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 34046705 - 34046667
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  34046705 taattttagtccctactaaaacaaagtttgtttaattat 34046667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 5087165 - 5087205
Alignment:
Q  361 tttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  5087165 tttaattttagtccctactacaacaaagtttgtttaattat 5087205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 131 - 406
Target Start/End: Original strand, 44359059 - 44359332
Alignment:
Q  131 acactctttatctggtaaatttttcaagagtcattccaaagatttagattattccaattcaaactcatgctaatgagtcaagattctcatgattccatta 230  Q
    ||||||||||||||||||||||| ||||||||  | |||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||     
T  44359059 acactctttatctggtaaattttccaagagtccgtacaaagatttacattattccacatcaaactcatgctaatgagtcaagattctcatgattccattc 44359158  T
Q  231 aacgagatcacgtggttatatatattcaaaggttaaatgtgtttttggtccaaatacaatatgggggtttctaagtttaattcttacttaatttttattg 330  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44359159 aacgagatcacgtggttata--tattcaaaggttaaatttgtttttggtccaaatacaatatgggggcttctaagtttaattcttacttaatttttattg 44359256  T
Q  331 cattattgggatttgcaaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  44359257 catttttgggatttgttaaatatatttacatttaatttaagtccctgctaaaacaacatttgtttaattatcttta 44359332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 44358827 - 44358743
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44358827 cgggtaacattgcattatctaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactgcgaat 44358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 14200924 - 14200979
Alignment:
Q  346 caaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||| |||||||||  ||||||||||| |||||||||||| ||||||||||||||    
T  14200924 caaaaaatatttacaggtaattttagtctctgctaaaacaaagtttgtttaattat 14200979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 8392302 - 8392349
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||| | ||||||||||||||||||||||||  |||||||||||||    
T  8392302 atttacttataattttagtccctgctaaaacaaaatttgtttaattat 8392349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 20720259 - 20720216
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||    
T  20720259 taattttagtcccttctaaaacaaagtttgtttaattattttta 20720216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 42487645 - 42487688
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  42487645 taattttagtccctgctaaaacaaagtttgtttgattatcttta 42487688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 18672509 - 18672471
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  18672509 taattttagtcactgctaaaacaaagtttgtttaattat 18672471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 20721206 - 20721244
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  20721206 taattttagtccctactaaaacaaagtttgtttaattat 20721244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 21439809 - 21439847
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  21439809 taattttagtccctactaaaacaaagtttgtttaattat 21439847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 18917525 - 18917473
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||||| | ||| ||||||| |||||||||||| |||||||||||||| ||||    
T  18917525 atttacttgtaagtttagtctctgctaaaacaaagtttgtttaattatcttta 18917473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 44493204 - 44493164
Alignment:
Q  361 tttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||| |||| || ||||||||||||||    
T  44493204 tttaattttagtccctgcaaaaataaagtttgtttaattat 44493164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 132 - 406
Target Start/End: Original strand, 13813829 - 13814101
Alignment:
Q  132 cactctttatctggtaaatttttcaagagtcattccaaagatttagattattccaattcaaactcatgctaatgagtcaagattctcatgattccattaa 231  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||||||||| |    
T  13813829 cactctttatctggtaaattttccaagagtccttccaaagatttacattattccacatcaaactcatgctaatgggtcaagattctcatgattccattca 13813928  T
Q  232 acgagatcacgtggttatatatattcaaaggttaaatgtgtttttggtccaaatacaatatgggggtttctaagtttaattcttacttaatttttattgc 331  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||    
T  13813929 acgagatcacgtggttata--tattcaaaggttaaatgtgtttttggtccatatacaatatggaggcttctaagtttaattcttacttaatttttattgc 13814026  T
Q  332 attattgggatttgcaaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    ||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  13814027 atttttaggatttgctaaatatatttacatttaattttagtccctgctaaaataacgtttgcttaattatcttta 13814101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 4269744 - 4269828
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4269744 cgggtaacatagcattatccaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 4269828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 54268814 - 54268869
Alignment:
Q  346 caaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  54268814 caaaaaatatttacatgtaattttagtccctgctaaaacaaagtttgtttaattat 54268869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 15771863 - 15771918
Alignment:
Q  346 caaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||| |||||||||| ||||| ||||||||||||||| || ||||||||||||||    
T  15771863 caaaaaatatttacatgtaattctagtccctgctaaaataaagtttgtttaattat 15771918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 27492641 - 27492594
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||| | |||||||||||| ||||||||||| ||||||||||||||    
T  27492641 atttacttataattttagtccatgctaaaacaaagtttgtttaattat 27492594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 29348590 - 29348547
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    ||||||||||||||| || ||||| |||||||||||||||||||    
T  29348590 taattttagtccctgttacaacaaagtttgtttaattatattta 29348547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 117424 - 117462
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  117424 taattttagtccctactaaaacaaagtttgtttaattat 117462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 32943304 - 32943266
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  32943304 taattttagtccctactaaaacaaagtttgtttaattat 32943266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 34995856 - 34995811
Alignment:
Q  356 ttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||| |||||||||||||||||||||| |  |||||||||||||    
T  34995856 ttacatataattttagtccctgctaaaactaaatttgtttaattat 34995811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 50615061 - 50615097
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaatt 399  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  50615061 taattttagtccctactaaaacaaagtttgtttaatt 50615097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 170; Significance: 5e-91; HSPs: 6)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 131 - 343
Target Start/End: Complemental strand, 80081 - 79871
Alignment:
Q  131 acactctttatctggtaaatttttcaagagtcattccaaagatttagattattccaattcaaactcatgctaatgagtcaagattctcatgattccatta 230  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  80081 acaccctttatctggtaaattttccaagagtcattctaaagatttacattattccacatcaaactcatgctaatgagtcaagattctcatgattccatta 79982  T
Q  231 aacgagatcacgtggttatatatattcaaaggttaaatgtgtttttggtccaaatacaatatgggggtttctaagtttaattcttacttaatttttattg 330  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  79981 aacgagatcacgtggttat--atattcaaaggttaaatgtgtttttggtccaaatacaatatgggggcttctaagtttaattcttacttaatttttattg 79884  T
Q  331 cattattgggatt 343  Q
    |||| ||||||||    
T  79883 catttttgggatt 79871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 80338 - 80411
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 92  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  80338 cgggtaacattgcattatgtaataaaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 80411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 80831 - 80904
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 92  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  80831 cgggtaacattgcattatgtaataaaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 80904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 81324 - 81397
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 92  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  81324 cgggtaacattgcattatgtaataaaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 81397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 81817 - 81890
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 92  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  81817 cgggtaacattgcattatgtaataaaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 81890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 82310 - 82383
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 92  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  82310 cgggtaacattgcattatgtaataaaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatg 82383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 31393898 - 31393982
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31393898 cgggtaacattgcattatctaatacaaaacttctcagcttattttcttcatgaagcaccaaacgacaaacaatgtcactgcgaat 31393982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 35369506 - 35369468
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  35369506 taattttagtccctgctaaaacaaagtttgtttaattat 35369468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 36018429 - 36018391
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36018429 taattttagtccctgctaaaacaaagtttgtttaattat 36018391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 401
Target Start/End: Original strand, 37706702 - 37706737
Alignment:
Q  366 ttttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37706702 ttttagtccctgctaaaacaaagtttgtttaattat 37706737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 16473299 - 16473261
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  16473299 taatattagtccctgctaaaacaaagtttgtttaattat 16473261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 16477870 - 16477832
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  16477870 taatattagtccctgctaaaacaaagtttgtttaattat 16477832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 21135639 - 21135601
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  21135639 taattttagtccctgccaaaacaaagtttgtttaattat 21135601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 24451800 - 24451762
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  24451800 taattttagtccctgctaaaataaagtttgtttaattat 24451762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 35863357 - 35863319
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  35863357 taatattagtccctgctaaaacaaagtttgtttaattat 35863319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 36063411 - 36063449
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  36063411 taattttagttcctgctaaaacaaagtttgtttaattat 36063449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 42024219 - 42024271
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||||||| || ||||||||||||||||||||| |||| | ||||||| ||||    
T  42024219 atttacatgtagttttagtccctgctaaaacaaagtttctctaattatcttta 42024271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 41550998 - 41551082
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41550998 cgggtaacatagcattatccaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactgcgaat 41551082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 37540121 - 37540066
Alignment:
Q  346 caaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  37540121 caaaaaatatttacatgtaattttagtccctgctaaaacaaagtttgtttaattat 37540066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 9633130 - 9633184
Alignment:
Q  347 aaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  9633130 aaaaaatatttacatgtaattttaatccctgctaaaacaaagtttgtttaattat 9633184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 33625112 - 33625065
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||| | |||||||||||| ||||||||||| ||||||||||||||    
T  33625112 atttacttctaattttagtccttgctaaaacaaagtttgtttaattat 33625065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 44167762 - 44167809
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||| | ||||||||||| |||||||||||| ||||||||||||||    
T  44167762 atttacttctaattttagtcactgctaaaacaaagtttgtttaattat 44167809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 3495961 - 3495923
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  3495961 taattttagtccctactaaaacaaagtttgtttaattat 3495923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 11396935 - 11396973
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  11396935 taattttagtccctgctaaaataaagtttgtttaattat 11396973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 15131020 - 15130982
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  15131020 taattttagtccttgctaaaacaaagtttgtttaattat 15130982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 43083832 - 43083870
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  43083832 taattttagtccctactaaaacaaagtttgtttaattat 43083870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 46044268 - 46044306
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  46044268 taattttagtccctgctaaaacaaagtttttttaattat 46044306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 55044297 - 55044381
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55044297 cgggtaacatagcattatccaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactgcgaat 55044381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 13604116 - 13604062
Alignment:
Q  347 aaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  13604116 aaaaaatatttacatgtaattttaatccctgctaaaacaaagtttgtttaattat 13604062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 23473448 - 23473493
Alignment:
Q  356 ttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||    
T  23473448 ttacttttaattttagtccctgctaaaacaaagtttgtttaattat 23473493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 25422393 - 25422346
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  25422393 atttacttttatttttagtccctgctaaaacaaagtttgtttaattat 25422346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 20650474 - 20650524
Alignment:
Q  356 ttacatttaattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||    
T  20650474 ttacatgtaattttagtccctactaaaacaaagtttgtttaattatcttta 20650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 10322013 - 10321970
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    ||||||||||||||||||||| || |||||||||||||| ||||    
T  10322013 taattttagtccctgctaaaaaaaagtttgtttaattatcttta 10321970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 11670424 - 11670386
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  11670424 taattttagtccctactaaaacaaagtttgtttaattat 11670386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 33689270 - 33689308
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  33689270 taattttaatccctgctaaaacaaagtttgtttaattat 33689308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 7491018 - 7490973
Alignment:
Q  356 ttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| ||||||||||||||||| || ||||| ||||||||||||||    
T  7491018 ttacttttaattttagtccctgttacaacaaagtttgtttaattat 7490973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 19146775 - 19146691
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19146775 cgggtaacatagcattatccaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactgcgaat 19146691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 23674111 - 23674027
Alignment:
Q  19 cgggtaacattacattatttaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactacgaat 103  Q
    ||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23674111 cgggtaacatagcattatccaatacaaaacttctctgcttattttcttcatgaagcaccaaacgacaaacaatgtcactgcgaat 23674027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 5430480 - 5430579
Alignment:
Q  302 taagtttaattcttacttaatttttattgcattattgggatttgcaaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||||||||| ||    || || |   |||||||| |||||||||  ||||||||| ||||||||||||||  |||||||||||||    
T  5430480 taagtttaattcttacttaattttaataatttttttagtccttgcaaaaaatatttacacgtaattttagcccctgctaaaacaaattttgtttaattat 5430579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 36367867 - 36367910
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  36367867 taattttagtccctgctaaaacaaagtttgtttaattattttta 36367910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 12000036 - 11999998
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  12000036 taattttagtccctgctaaaacaaagtttgtttaattat 11999998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 33707330 - 33707384
Alignment:
Q  347 aaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| |||||||||| |||||||||||| || |||||||| ||||||||||||||    
T  33707330 aaaaaatatttacatgtaattttagtccatgttaaaacaaagtttgtttaattat 33707384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 12368220 - 12368258
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  12368220 taattttagtccctactaaaacaaagtttgtttaattat 12368258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 15053937 - 15053899
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  15053937 taattttagtccctactaaaacaaagtttgtttaattat 15053899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 29231425 - 29231387
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  29231425 taattttagtccctactaaaacaaagtttgtttaattat 29231387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 33708922 - 33708960
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  33708922 taattttagtcccttctaaaacaaagtttgtttaattat 33708960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 35188486 - 35188452
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaa 397  Q
    |||||||||||||||||||||||| ||||||||||    
T  35188486 taattttagtccctgctaaaacaaagtttgtttaa 35188452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 36248642 - 36248604
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  36248642 taattttagtccctactaaaacaaagtttgtttaattat 36248604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 37986721 - 37986759
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  37986721 taattttagtccctactaaaacaaagtttgtttaattat 37986759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 7259 - 7212
Alignment:
Q  354 atttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||| | ||||||||||| |||||||||||| ||||||||||||||    
T  7259 atttacttataattttagtctctgctaaaacaaagtttgtttaattat 7212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 35588 - 35553
Alignment:
Q  366 ttttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35588 ttttagtccctgctaaaacaaagtttgtttaattat 35553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 24097 - 24054
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattatattta 406  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||    
T  24097 taattttagtcccttctaaaacaaagtttgtttaattattttta 24054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 25034 - 25072
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  25034 taattttagtccctactaaaacaaagtttgtttaattat 25072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 27280488 - 27280433
Alignment:
Q  346 caaaatatatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||| ||||| |||| |||||||||| |||||||||||||  |||||||||||||    
T  27280488 caaaaaatattgacatgtaattttagtacctgctaaaacaaattttgtttaattat 27280433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 2004262 - 2004224
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  2004262 taattttagtccctgctacaacaaagtttgtttaattat 2004224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 4461939 - 4461977
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  4461939 taattttagtccctgctaaaacgaagtttgtttaattat 4461977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 14049725 - 14049767
Alignment:
Q  356 ttacatttaattttagtccctgctaaaacaacgtttgtttaat 398  Q
    |||||| ||||||||||||||||||||| || |||||||||||    
T  14049725 ttacatataattttagtccctgctaaaataaagtttgtttaat 14049767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 26865683 - 26865721
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  26865683 taattttagtccctactaaaacaaagtttgtttaattat 26865721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 34527336 - 34527298
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  34527336 taattttagtccctactaaaacaaagtttgtttaattat 34527298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 38693443 - 38693481
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  38693443 taatattagtccctgctaaaacaaagtttgtttaattat 38693481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 9937 - 9975
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  9937 taattttagtccctactaaaacaaagtttgtttaattat 9975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 21727 - 21765
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  21727 taattttagtccatgctaaaacaaagtttgtttaattat 21765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 239989 - 240027
Alignment:
Q  363 taattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  239989 taattttagtccctactaaaacaaagtttgtttaattat 240027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 17347 - 17392
Alignment:
Q  356 ttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    |||| |||||||||||||||| |||||| || ||||||||||||||    
T  17347 ttacttttaattttagtccctactaaaataaagtttgtttaattat 17392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 52678 - 52630
Alignment:
Q  353 tatttacatttaattttagtccctgctaaaacaacgtttgtttaattat 401  Q
    ||||||||| |||| |||||| || ||||||||| ||||||||||||||    
T  52678 tatttacatgtaatcttagtcgctactaaaacaaagtttgtttaattat 52630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University