View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_high_9 (Length: 447)
Name: NF11050_high_9
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 8681379 - 8680959
Alignment:
| Q |
19 |
aattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaatacagatatgcatccaagtttaacgatttaatgttattct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8681379 |
aattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaatacatatatgcatccaagtttaacgatttaatgttattct |
8681280 |
T |
|
| Q |
119 |
tatcatgagttaatggtatatacataaatgaactagcaacacaaaagacgagttggcgcatcaaaattaacatttcaaaatgatttaacttttagactgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8681279 |
tatcatgagttaatggtatatacataaatgaactagcaacacaaaagacgagttggcgcatcaaaattaacatttcaaaatgatttaacttttagactgc |
8681180 |
T |
|
| Q |
219 |
accaaggcaatcaagcatgccagaacattatagttacacatgcatgaaatagcacgattgccacgtgatgtccagtaatcatagatca-atagaattaaa |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
8681179 |
accaaggcaatcaagcatgccaaaacattatagttacacatgcatgaaatagcacgattgccacatgatgtccagtaatcatagatcacttagaattaaa |
8681080 |
T |
|
| Q |
318 |
atttctaacaatttgttgcatcaactgcgggggctaactcttgtgctgatcatctttctcacctagaccattctagtaggcacgcaatagggtgagataa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
8681079 |
atttctaacaatttgttgcatcaactgcgggggctaactcttgtgctgatcgtctttctcacctagaccattctagtaggcatgcaatagggcgagataa |
8680980 |
T |
|
| Q |
418 |
ggatgggtttcgctttcttct |
438 |
Q |
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||||||||||| ||||||||| |
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| T |
8680979 |
ggatgggtttcactttcttct |
8680959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 8680945 - 8680881
Alignment:
| Q |
373 |
ttctcacctagaccattctagtaggcacgcaatagggtgagataaggatgggtttcgctttcttc |
437 |
Q |
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||||| ||||||||||||||||||||| ||||||||| | ||||| |||||||||| |||||||| |
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| T |
8680945 |
ttctcgcctagaccattctagtaggcatgcaatagggcgggataaagatgggtttcactttcttc |
8680881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 4463459 - 4463406
Alignment:
| Q |
25 |
gatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa |
78 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
4463459 |
gatgtcagtgtggcctcctgatgtctgtctttctccctgcttagcaaaaaaaaa |
4463406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 4407438 - 4407385
Alignment:
| Q |
25 |
gatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa |
78 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
4407438 |
gatgtcggtgtggcctcctgatgtctgtctttctccctgcttagcaaaaaaaaa |
4407385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 15468284 - 15468231
Alignment:
| Q |
25 |
gatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa |
78 |
Q |
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|||||| |||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
15468284 |
gatgtcggtgtggcctcctgatgtctgtctttctccctgcttagcaaaaaaaaa |
15468231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 29858619 - 29858655
Alignment:
| Q |
25 |
gatgtcagtgtggtctcctgatgtctgtctttctccc |
61 |
Q |
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|||||| |||||| ||||||||||||||||||||||| |
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| T |
29858619 |
gatgtcggtgtggcctcctgatgtctgtctttctccc |
29858655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 13336999 - 13337035
Alignment:
| Q |
25 |
gatgtcagtgtggtctcctgatgtctgtctttctccc |
61 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||| |
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| T |
13336999 |
gatgtcggtgtggcctcctgatgtctgtctttctccc |
13337035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 5252117 - 5252081
Alignment:
| Q |
25 |
gatgtcagtgtggtctcctgatgtctgtctttctccc |
61 |
Q |
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|||||| |||||| ||||||||||||||||||||||| |
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| T |
5252117 |
gatgtcggtgtggcctcctgatgtctgtctttctccc |
5252081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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