View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11050_low_1 (Length: 770)

Name: NF11050_low_1
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11050_low_1
NF11050_low_1
[»] chr3 (1 HSPs)
chr3 (16-763)||(11623830-11624577)


Alignment Details
Target: chr3 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 16 - 763
Target Start/End: Complemental strand, 11624577 - 11623830
Alignment:
Q  16 catatctatgattcaatgtcaaatgatctcaatcctgcagagaaaaaggttcttaacgacactcgaaataatggtgatcgtttttcgagtgcgtcttctg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11624577 catatctatgattcaatgtcaaatgatctcaatcctgcagagaaaaaggttcttaacgacactcgaaataatggtgatcgtttttcaagtgcgtcttctg 11624478  T
Q  116 ttacagtttcaaaatccatggaggaaagtggtaaaaacatgacacaagaatcattgccacagcaaaataatggtttcattcctcaagttccatgtatgac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  11624477 ttacagtttcaaaatccatggaggaaagtggtaaaaacatgacacaagaatcattgccacagaaaaataatggtttcattccccaagttccatgtatgac 11624378  T
Q  216 tagtgttccttggccttatacttggagttctggtgcaattccctcgccgcaaactttgtgtcctccgggatttcccatgtcattttaccctgctcctttt 315  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11624377 tagtgttccttggccttatacttggagttctggcgcaattccctcgccgcaaactttgtgtcctccgggatttcccatgtcattttaccctgctcctttt 11624278  T
Q  316 tggaatgttccttggtttccgcctcatactcccgcgacaactccaagatctagtccgaaatctccaacgctcgggaaacactcgagggacgatgacaaca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11624277 tggaatgttccttggtttccgcctcatactcccgcgacaactccaagatctagtccgaaatctccaacgctcgggaaacactcgagggacgatgacaaca 11624178  T
Q  416 acgacgacgaaatagctaaacaagaccatttgcaaacagaagaatcaccaaaacaaagaaatgggtgtgttttggttcctaaaacattgcgaattgatga 515  Q
     | |||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11624177 ccaacgacgaaaatgctaaacaagacagtttgcaaacagaagaatcaccaaaacaaagaaatgggtgtgttttggttcctaaaacattgcgaattgatga 11624078  T
Q  516 tccaaccgaagctgcaaagagttcaatttgggaaacacttggaattaagaatgaaggtttgagtagaggtggtatgactaaggcttttcaatcaaagaaa 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11624077 tccaaccgaagctgcaaagagttcaatttgggaaacacttggaattaagaatgaaggtttgagtagaggtggtatgactaaggcttttcaatcaaagaaa 11623978  T
Q  616 gatggtaaaaaccatgttcaaacctctccgatgttgatggctaaccctgcagctttagctagatcacttaatttccatgagaactcttaaataagaaata 715  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11623977 gatggtaaaaaccatgttcaaacctctccaatgttgatggctaaccctgcagctttagctagatcgcttaatttccatgagaactcttaaataagaaata 11623878  T
Q  716 atcctttttgtattgtgtttgagaattgaggttagtcacttcttctct 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11623877 atcctttttgtattgtgtttgagaattgaggttagtcacttcttctct 11623830  T

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