View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_low_11 (Length: 390)
Name: NF11050_low_11
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_low_11 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 113 - 390
Target Start/End: Complemental strand, 11080375 - 11080097
Alignment:
| Q |
113 |
aaattcattgattcaaactcaatttcatcaacaacataaccaaatacacactaaatttgtgcttataaattcacttttgaatttcacactttttt-aagc |
211 |
Q |
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| T |
11080375 |
aaattcattgattcaaactcaatttcatcaacaacataaccaaatactcactaaatttgtgcttataaattcacttttgaatttcacacttttttcaagc |
11080276 |
T |
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| Q |
212 |
ttattttctataactaactctaaatttctcaagcaaaaagaaagggagaatttggagatacactagtccaggaagcatgctccctccaagaatctcctaa |
311 |
Q |
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| T |
11080275 |
ttattttctataactaactctaaatttctcaagcaaaaagaaagggggaatttggagatacactagtccaagaagcatgctccctccaagaatctcctaa |
11080176 |
T |
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| Q |
312 |
ctttttcaaatcaacaagagaagatccacctcctcctcttgcttccttagcccttattttcatcttcaaaattgtctct |
390 |
Q |
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| T |
11080175 |
ctttttcaaatcaacaagagaagatccacctcctcctcttgcttccttagcacttattttcatcttcaaaattgtctct |
11080097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 148 - 390
Target Start/End: Complemental strand, 11003198 - 11002956
Alignment:
| Q |
148 |
ataaccaaatacacactaaatttgtgcttataaattcacttttgaatttcacacttttttaagcttattttctataactaactctaaatttctcaagcaa |
247 |
Q |
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| T |
11003198 |
ataacaaaatacaaactaaatttgtgtttagaaattcacttttgaattttacacttttttaagcttgttttctataactaattctctatttttcaagcaa |
11003099 |
T |
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| Q |
248 |
aaagaaagggagaatttggagatacactagtccaggaagcatgctccctccaagaatctcctaactttttcaaatcaacaagagaagatccacctcctcc |
347 |
Q |
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| T |
11003098 |
aaaccaatggggaatttggagataaactagtcaaagaagcatgctccctccaagaatctcctaaccttttcaaatcaacaagagaagatccacctcctcc |
11002999 |
T |
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| Q |
348 |
tcttgcttccttagcccttattttcatcttcaaaattgtctct |
390 |
Q |
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| T |
11002998 |
ttttgcctccttagcacttgttttcatcttcaaaattgtctct |
11002956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 11080521 - 11080409
Alignment:
| Q |
1 |
aattggaggacacacaaacattttcaacgcatgattaacattttgaacataatttatagagttcttaataatttaaaataatttaggaactagtttgaca |
100 |
Q |
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| T |
11080521 |
aattggaggacacacaaacattttcaacgcatgattaacattttgaacataatttagagaattctcaataatttaaaataatttaggaactaatttgaca |
11080422 |
T |
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| Q |
101 |
acatgtgacacta |
113 |
Q |
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|||| |||||||| |
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| T |
11080421 |
acatatgacacta |
11080409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 11019468 - 11019344
Alignment:
| Q |
259 |
gaatttggagatacactagtccaggaagcatgctccctccaagaatctcctaactttttcaaatcaacaagagaagatccacctcctcctcttgcttcct |
358 |
Q |
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|||||||| |||| |||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11019468 |
gaatttggtgataaactattccaagaagcatgctccctccatgaatctcccaactttttcaaatcaacaagagaagatccacctcctcctcttgcctcct |
11019369 |
T |
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| Q |
359 |
tagcccttattttcatcttcaaaat |
383 |
Q |
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|||| ||||||||||| |||||||| |
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| T |
11019368 |
tagcacttattttcattttcaaaat |
11019344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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