View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_low_15 (Length: 279)
Name: NF11050_low_15
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 10935733 - 10935974
Alignment:
| Q |
23 |
atttgtggaataagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataatatttggttgatattgttattatttatttccgtttg |
122 |
Q |
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| T |
10935733 |
atttgtggaataagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataatgtttggttgatattgttattatttatctccgtgtg |
10935832 |
T |
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| Q |
123 |
tttgtcttggagggtgccatttattgttctgttatggcaaaagaaatttcactattccagttcgagtttactcattttctgatttaattttgttacatac |
222 |
Q |
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| T |
10935833 |
tttgtcttggagggtgccatttattgttctgttatggcaaaagaaatttcactattccagttcaagtttactcattttctgatttaattttgttacatac |
10935932 |
T |
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| Q |
223 |
tgggtttgataatgattttcaggttctctacagtgtttgatt |
264 |
Q |
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| T |
10935933 |
tgggtttgataatgattttcaggttctctacagtgtttgatt |
10935974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 10960880 - 10961117
Alignment:
| Q |
33 |
taagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataat-atttggtt-gatattgttattatttatttccgtttgtttgtctt |
130 |
Q |
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| T |
10960880 |
taagattttggtattttgaagagagagatgtagctgatccactcaatgagataaggatatgttttgttattgtaattatttatttccatttgtttgtttt |
10960979 |
T |
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| Q |
131 |
ggagggtgccatttattg------------ttctgttatggcaaaagaaatttcactattccagttcgagtttactcattttctgatttaattttgttac |
218 |
Q |
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| T |
10960980 |
ggagggtgccctttattgtacttgtaccttttctgttatgccgaaataacttacactattccagat---gtttactcctttt-ttatttaattttgtaac |
10961075 |
T |
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| Q |
219 |
atactgggtttgataatgattttcaggttctctacagtgttt |
260 |
Q |
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| T |
10961076 |
ttactggtttcaataataattttcaggttctctacagtgttt |
10961117 |
T |
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