View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_low_17 (Length: 274)
Name: NF11050_low_17
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 41830147 - 41830401
Alignment:
| Q |
6 |
aggagcacagatattattggatcagaatgaaaaatcaagaaaataaaaaggaggaaacatctttcatcaactcctcaaaatcccattctcccaagttgaa |
105 |
Q |
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| T |
41830147 |
aggaacacaaatattattggatcagaatgaaaaatcaagaaaataaaaaggaggaaacatctttcatcaactcctcaaaatcccattctcccaagttgaa |
41830246 |
T |
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| Q |
106 |
ttgttcttgaaataaattctccactac---acccctactttcaatttcattattattgctttcaataatattgcagttactaagcatattgtttatcttt |
202 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41830247 |
ttgttcttgaaataaattctccactacttcacccctactttcaattttattattattgctttcaataatattgcagttactaagcatattgtttatcttt |
41830346 |
T |
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| Q |
203 |
atgtcatcaaaataataatcagaatggttagggttagtttctatgttgcacttat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41830347 |
atgtcatcaaaataataatcagaatggttagggttagtttctatgttgcacttat |
41830401 |
T |
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