View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_low_22 (Length: 230)
Name: NF11050_low_22
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 1841537 - 1841344
Alignment:
| Q |
16 |
aagaacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttgataattcaactatgataccagctacacc |
115 |
Q |
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| T |
1841537 |
aagaacatggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttgataattcaactatgataccagctacacc |
1841438 |
T |
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| Q |
116 |
taattataagaataataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaatagagtgaagagaggtagaagcagttca |
212 |
Q |
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| T |
1841437 |
taattataaga---ataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaatggagtgaagagaggtagaagcagttca |
1841344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 1824234 - 1824138
Alignment:
| Q |
19 |
aacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttgataattcaactatgataccagctacacc |
115 |
Q |
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|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1824234 |
aacatggtttgaaatcgaaaaaggttcctcgtaaaagttcttctccaaagacatatattttgtcttttgataattcaactatgataccagctacacc |
1824138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 1824109 - 1824023
Alignment:
| Q |
129 |
aataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaa---aatagagtgaagagaggtagaagcagttca |
212 |
Q |
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||||||||||||| |||||||| |||||| |||| |||||| ||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
1824109 |
aataaacgtagccgtgaaagtactcaaaaagctgaagtgaaaactaatcaacaaatcaatggagtgaagaaaggtagaagcagttca |
1824023 |
T |
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