View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_low_4 (Length: 564)
Name: NF11050_low_4
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 17 - 547
Target Start/End: Original strand, 40502392 - 40502921
Alignment:
| Q |
17 |
acatcaaatcaaactgtgatagtgctgtttgcaacttgggaaatgatgctgctattggtagtcttgtgaggaatggtgatggccagtttaacgcgttcat |
116 |
Q |
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| T |
40502392 |
acatcaaatcaaactgtgatagtgctgtttgcaacttgggaaatgatgctgctattggtagtcttgtgaggaatggtgatggccagtttaatgcgttcat |
40502491 |
T |
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| Q |
117 |
tggagcttgttcatttttggagtctaaattacggactatccctaacatggcttaacttaatcattgaaaatgggtattccaaggtgatgatagaatttga |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40502492 |
tggagcttgttcatttttggagtctaaattacagactatcc-taacatggcttaacttaatcattgaaaatgggtattccaaggtgatgatagaatttga |
40502590 |
T |
|
| Q |
217 |
ttctctcattgcaaccaagttaattcaattgagatgtgtgtcaaatcatccccatttcaaaatagttgtcggtatcaagagtatgttagatcacatagag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40502591 |
ttctctcattgcaaccaagttaattcaattgagatgtgtgtcaaatcatccccatttcaaaatagttgttggtatcaagagtatgttagatcacatagag |
40502690 |
T |
|
| Q |
317 |
aatatcgctatttcccatgtcatgtgagaaggcaacattgcagctaacaagattgcaaaacctggtttagagacatcttgttttacttatagtattccag |
416 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40502691 |
aatatctctatttcccatgtcatgtgagaaggcaacattgcagctaacaagattgcaaaacctggtttagagacatcttgttttacttatagtattccag |
40502790 |
T |
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| Q |
417 |
tattccttcatttcatttggatgttctaacttctggttatgatggtttaattaggccgtcttctagtttaggtttttatctttccgtttctactttcttg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40502791 |
tattccttcatttcatttggatgttctaacttctggttatgatggtttaattaggccgtcttctagtttaggtttttatctttccgtttctactttcttg |
40502890 |
T |
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| Q |
517 |
aggcgttagcccatgaaaccacccgaaaaaa |
547 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40502891 |
aggcgttagcccatgaaaccacccgaaaaaa |
40502921 |
T |
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