View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_low_7 (Length: 460)
Name: NF11050_low_7
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 11749133 - 11748978
Alignment:
| Q |
1 |
tttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttgg |
100 |
Q |
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| T |
11749133 |
tttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacataggaagaattcactgcatattttggagtgttgg |
11749034 |
T |
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| Q |
101 |
actcttccacattagaggtatttccatgaaatttttattgctatggtggtagtaaa |
156 |
Q |
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| T |
11749033 |
acacttccacggtagaggtatgtccatgaaatttttattgctatggtggtagtaaa |
11748978 |
T |
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Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 52011324 - 52011204
Alignment:
| Q |
1 |
tttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttgg |
100 |
Q |
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||||||||| ||||||| ||||||| |||||||||| || |||||||||| ||||||||||||||| |||||||||||||| || ||||||| |||||| |
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| T |
52011324 |
tttcttgaactacttctgagtgggtttcctactcatattcggcttaaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttgg |
52011225 |
T |
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| Q |
101 |
actcttccacattagaggtat |
121 |
Q |
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| T |
52011224 |
acacttccatattagaggtat |
52011204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 51988214 - 51988294
Alignment:
| Q |
41 |
ggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
121 |
Q |
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| T |
51988214 |
ggcttaaagattgcttctggttgacagaggaagaatttataaaatattttggaacattggacacttccatattagaggtat |
51988294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 52000945 - 52000917
Alignment:
| Q |
412 |
aataggtgctacaacttgaccaatgtgga |
440 |
Q |
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| T |
52000945 |
aataggtgctacaacttgaccaatgtgga |
52000917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 52001419 - 52001339
Alignment:
| Q |
41 |
ggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
121 |
Q |
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|||||||||| ||||| ||| ||||| |||||||||| || |||||||||| ||||||| ||||| ||||||||||| |
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| T |
52001419 |
ggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtat |
52001339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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