View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11050_low_9 (Length: 456)
Name: NF11050_low_9
Description: NF11050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11050_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 440
Target Start/End: Original strand, 40822215 - 40822645
Alignment:
| Q |
6 |
agaatggtcgtttagctttcaaatatctaagtgtctgtttggatatacgtctaagccttcaaatgcgcgaaaacatgaaagctacaatttggagagtcta |
105 |
Q |
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| T |
40822215 |
agaatggtcgtttagctttcaaatatccaagtgtctgtttggatatacgtctaagccttcaaatgcgcgaaaacatgaaagctacaatttggagagtcta |
40822314 |
T |
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| Q |
106 |
gcttttgcgttgaaaaatgcattaggaaacgtgagaaaacacgagtctcttagtgtaaacggtagggtaaaccaaacacataagcttnnnnnnnnnnnnn |
205 |
Q |
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| T |
40822315 |
gcttttgcgttgaaaaatgcattaggaaacgtgagaaaacacgagtctcttagtgtaaacagtagggtaaaccaaacacataagcttaaaaaataaaaa- |
40822413 |
T |
|
| Q |
206 |
tttggaatatttaaaaaacataatgtatgaattaatatgattggagctagtactgtactatgctactcgttttgcatgattggagggaacttcaaatatt |
305 |
Q |
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| T |
40822414 |
tttggaatatttaaaaaacataatgtatgaattaatatgattggagctagtactgtactatgctactcgttttgcatgattggagggaacttcaaatatt |
40822513 |
T |
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| Q |
306 |
cattcctttatttcctttactctgacatatttggcaacgtctgtgtgtttggaatagccttgttatccttccttttgtagattctattctcctgctcttc |
405 |
Q |
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| T |
40822514 |
c----ctttatttcctttactctgacatatttggcaacgtctgtgtgtttggaatagccttgttatccttccttttgtagattctattctcctgctcttc |
40822609 |
T |
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| Q |
406 |
ttatatagcaggtttagttt-gtgcacatgcattct |
440 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
40822610 |
ttatatagcaggtttagtttagtgcacatgcattct |
40822645 |
T |
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