View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11051_high_1 (Length: 304)
Name: NF11051_high_1
Description: NF11051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11051_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 10233263 - 10232975
Alignment:
| Q |
1 |
ttagtggtgttggtgtgtccaagtcgtgtccggttctgtattcgtgcttcacagggaccagattgttgagaaagtgataatttaggggctaaatttattg |
100 |
Q |
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| T |
10233263 |
ttagtggtgttggtgtgtccaagtcgtgtccggttctgtatccgtgcttcacagggaccagattgttgagaaagtgataatttaggggttaaatttattg |
10233164 |
T |
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| Q |
101 |
ttaactgatttaatagttatctgacaacattttgtacagaatagcgcattgcagaacaatagctatgctatagcgctactatatgtgcctattcaacaac |
200 |
Q |
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| T |
10233163 |
ttgactgatttaatagttatctgacaacattttgtacagaatagcgcattgcagaacaatagctatgctatagcgctactatatgtgcctattcaacaac |
10233064 |
T |
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| Q |
201 |
agtcgcgacagttaaacctaataatcgaacttcattgaacaattcaattttccaattccaataatttcatgcatggttactgtcaaaac |
289 |
Q |
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| T |
10233063 |
agtcgcgacagttaaacctaataatcgaacttcattgaacaattcaattttccaattccaataatttcatgcatggttactgtcaaaac |
10232975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 4381985 - 4382027
Alignment:
| Q |
117 |
ttatctgacaacattttgtacagaatagcgcattgcagaacaa |
159 |
Q |
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| T |
4381985 |
ttatttgacaacattttgtactaaatagcgcattgcagaacaa |
4382027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 14933027 - 14933072
Alignment:
| Q |
118 |
tatctgacaacattttgtacagaatagcgcattgcagaacaatagc |
163 |
Q |
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| T |
14933027 |
tatctgacaacattttgtactaaatagtgtattgcagaacaatagc |
14933072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 22214965 - 22214924
Alignment:
| Q |
122 |
tgacaacattttgtacagaatagcgcattgcagaacaatagc |
163 |
Q |
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| T |
22214965 |
tgacaacattttgtactgaatagtgtattgcagaacaatagc |
22214924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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