View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11051_high_2 (Length: 302)

Name: NF11051_high_2
Description: NF11051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11051_high_2
NF11051_high_2
[»] chr5 (9 HSPs)
chr5 (11-302)||(39576199-39576490)
chr5 (14-300)||(39572195-39572481)
chr5 (71-133)||(4100468-4100530)
chr5 (49-133)||(2326343-2326427)
chr5 (71-133)||(4146517-4146579)
chr5 (229-302)||(2326514-2326587)
chr5 (71-129)||(225362-225420)
chr5 (78-193)||(3561541-3561653)
chr5 (226-283)||(3561686-3561743)
[»] chr8 (6 HSPs)
chr8 (49-302)||(9841825-9842075)
chr8 (49-124)||(9860641-9860716)
chr8 (71-136)||(27360976-27361041)
chr8 (228-285)||(9902792-9902849)
chr8 (85-129)||(9902942-9902986)
chr8 (237-300)||(9860473-9860536)
[»] chr1 (4 HSPs)
chr1 (55-302)||(46672088-46672335)
chr1 (56-136)||(46445998-46446078)
chr1 (55-129)||(5054203-5054277)
chr1 (238-300)||(5054375-5054437)
[»] chr3 (3 HSPs)
chr3 (71-136)||(7256838-7256903)
chr3 (251-302)||(49385962-49386013)
chr3 (229-284)||(49385879-49385934)
[»] scaffold0658 (1 HSPs)
scaffold0658 (71-136)||(2856-2921)
[»] chr6 (1 HSPs)
chr6 (71-136)||(112644-112709)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 39576490 - 39576199
Alignment:
Q  11 cacagacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaat 110  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39576490 cacaaacgaaatatcgcactcataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattctcctgaat 39576391  T
Q  111 caaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacg 210  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  39576390 caaaatccaaagtgtagatttgatatcttttctgaaaatgatctttatacacaatgcaagaaagacaatttcccatccataaagacttcagaggcggacg 39576291  T
Q  211 accaagcgttgacacagggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagt 302  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576290 accaagcgttgacacagggggaaatgaatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatccagt 39576199  T

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Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 39572481 - 39572195
Alignment:
Q  14 agacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaa 113  Q
    |||| ||||||| || | ||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||| ||||||||    
T  39572481 agacaaaatatctcaatcataatatcaagctggttaccacaagcagcaacataatcaaaaggtcccatctcatgataaggagaccattttcttgaatcaa 39572382  T
Q  114 aatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgacc 213  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||| || |||| ||||||||||| |||||| ||| ||||||||    
T  39572381 aatccaaaatgtagattggatatcttttttgaaaatgatctttatacacaatgcaagaaaagcgattttccatccataaaaacttcacaggtggacgacc 39572282  T
Q  214 aagcgttgacacagggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatcca 300  Q
    | || |  ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39572281 acgcatcaacacaggtggaaatggatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatcca 39572195  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 4100468 - 4100530
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4100468 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttga 4100530  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 2326343 - 2326427
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    ||||| || ||| |||||||  || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2326343 accacaagtagccacataatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttga 2326427  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 4146579 - 4146517
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||    
T  4146579 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 4146517  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 2326514 - 2326587
Alignment:
Q  229 gggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagt 302  Q
    ||||| |||||||||||| |  ||||||||||| ||||||| |||||||||||||||||  | |||||||||||    
T  2326514 gggaagtggatattctcgcataataatttccttgtcaacattcatcacaatcacttccttttctgttatccagt 2326587  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 225420 - 225362
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||| || ||||||||    
T  225420 aaaggtcagatctcatgataaagagaccattttcttgcatcaaaatctaacatgtagat 225362  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 3561541 - 3561653
Alignment:
Q  78 ccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggca 177  Q
    ||||||| |||||||| ||||||||||||||||  | |||||||||||| |||||| || | ||   ||   |||||| || || |||||||||||||      
T  3561541 ccatctcgtgataaagtgaccattttcctgaattgatatccaaaatgtaaatttgaaatgtttt---aatgggatcttcatgcacaatgcaagaaaggtg 3561637  T
Q  178 atttcccatccataaa 193  Q
    ||||||||||||||||    
T  3561638 atttcccatccataaa 3561653  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 3561686 - 3561743
Alignment:
Q  226 agggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcact 283  Q
    |||||||| |||||||||||  || |||| |||||| |||||||||||||||||||||    
T  3561686 agggggaagtggatattctctgacaataacttccttgtcaacatccatcacaatcact 3561743  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 302
Target Start/End: Complemental strand, 9842075 - 9841825
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaa 148  Q
    ||||| |||||  |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || |   | ||    
T  9842075 accacaagcagacacataatcaaaaggtcccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtact---ataa 9841979  T
Q  149 tgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgta 248  Q
      |||||||  |  |||||||||||||| ||||||||||||||||    ||  | |||||| |  | || |      || ||||| ||||||||||||||    
T  9841978 gtatctttagtcgcaatgcaagaaaggcgatttcccatccataaaagtatcgcaagcggaccaaaacgcatatttctagagggaagtggatattctcgta 9841879  T
Q  249 cgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagt 302  Q
    | ||| ||||||| ||||||||||||||||||||||  |||| |||||||||||    
T  9841878 caatagtttccttgtcaacatccatcacaatcactttgtcatatgttatccagt 9841825  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 9860716 - 9860641
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatg 124  Q
    ||||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9860716 accacaagcagacacataatcaaaaggtcccatctcatgataaagagaccattttcctgaatcatgatccaaaatg 9860641  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 27361041 - 27360976
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  27361041 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 27360976  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 9902849 - 9902792
Alignment:
Q  228 ggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttc 285  Q
    |||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  9902849 ggggaagtggatattctcgtagaataatttccttgtcaacatccatcacaatcacttc 9902792  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 9902986 - 9902942
Alignment:
Q  85 atgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  9902986 atgataaaaagaccattttcttgaatcaaaatccaaaatgtagat 9902942  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 9860536 - 9860473
Alignment:
Q  237 gatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatcca 300  Q
    ||||||||||||  ||||||| | | ||||||||||| |||||||||||||  |||||||||||    
T  9860536 gatattctcgtataataatttgcctgtcaacatccatgacaatcacttccttttttgttatcca 9860473  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 302
Target Start/End: Original strand, 46672088 - 46672335
Alignment:
Q  55 agcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatct 154  Q
    |||||| |||||||  ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||   |  | ||  | ||||    
T  46672088 agcagccacataatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttgatatgcttcattaattttatct 46672187  T
Q  155 ttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgtacgataa 254  Q
    || |||| |||||||||||||  |||||||||| ||||| | |   ||     || | || || |   || || ||||| ||||||||||| ||| ||||    
T  46672188 ttgtacacaatgcaagaaaggtgatttcccatcaataaaaaatctggaactttaccaacatgcatcagcatagtgggaagtggatattctcatacaataa 46672287  T
Q  255 tttccttatcaacatccatcacaatcacttcctcatttgttatccagt 302  Q
    ||||  ||||||||||||||||||| ||||| ||||||||||| ||||    
T  46672288 tttctctatcaacatccatcacaattacttcatcatttgttattcagt 46672335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 46446078 - 46445998
Alignment:
Q  56 gcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  46446078 gcagccacataatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttgatat 46445998  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 5054203 - 5054277
Alignment:
Q  55 agcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  5054203 agcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagat 5054277  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 5054375 - 5054437
Alignment:
Q  238 atattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatcca 300  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  5054375 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatcca 5054437  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 7256903 - 7256838
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  7256903 aaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttgatat 7256838  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 49385962 - 49386013
Alignment:
Q  251 ataatttccttatcaacatccatcacaatcacttcctcatttgttatccagt 302  Q
    |||||||||||| |||||| ||||||||||||||||||  ||||||||||||    
T  49385962 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccagt 49386013  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 49385934 - 49385879
Alignment:
Q  229 gggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcactt 284  Q
    ||||| || ||||||| |||| |||||||||||||||| || ||||||||||||||    
T  49385934 gggaagtgcatattcttgtacaataatttccttatcaatattcatcacaatcactt 49385879  T

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Target: scaffold0658 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 2856 - 2921
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  2856 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 2921  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 112644 - 112709
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||| ||||||||||||||||||| |||||||||| |||| |||||||||   ||||||||||||    
T  112644 aaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaagcatagatttgatat 112709  T

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