View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11051_low_2 (Length: 329)
Name: NF11051_low_2
Description: NF11051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11051_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 11903266 - 11903577
Alignment:
| Q |
1 |
ttcatggagagaacggatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattcca |
100 |
Q |
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| T |
11903266 |
ttcatggagagaacggatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattcca |
11903365 |
T |
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| Q |
101 |
ggaacaccaacaatgacaataacaggaacgaaatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaa |
200 |
Q |
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| T |
11903366 |
ggaacaccaacaatgacaataacaggaacgaaatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaa |
11903465 |
T |
|
| Q |
201 |
ccatggtaattttctcaaaatttcttttgacattcttcatgttactattaactgtttctgttgctgcttctgctgcttcttgagatattgacaaacacaa |
300 |
Q |
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| T |
11903466 |
ccatggtaattttctcaaaatttcttttgacattcttcatgttactattaactgtttctgttgctgcttctgctgcttcttgagatattgacaaacacaa |
11903565 |
T |
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| Q |
301 |
tccctttaaatc |
312 |
Q |
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| T |
11903566 |
tccctttaaatc |
11903577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 11730924 - 11730745
Alignment:
| Q |
16 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatg |
115 |
Q |
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| T |
11730924 |
gatccaaattggttgtagcccaaaatttgctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaatg |
11730825 |
T |
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| Q |
116 |
acaataacaggaac---gaaatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttc |
192 |
Q |
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| T |
11730824 |
acaaaaacaccaacatgaaaatcatcagtagaattgttcaagttaagtagttgatctacaagctctttcttctctttttc |
11730745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 11730461 - 11730274
Alignment:
| Q |
35 |
ccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgacaataacaggaac---ga |
131 |
Q |
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| T |
11730461 |
ccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaatgacaaaaacaccaacatgaa |
11730362 |
T |
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| Q |
132 |
aatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaaccatggtaattttctcaaa |
219 |
Q |
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| T |
11730361 |
aagcatcagtagatttgatccacttaagtagtcgatctataatctctttcttctcatattctcttccaaccacagtaactttctcaaa |
11730274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 11859234 - 11859136
Alignment:
| Q |
16 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
114 |
Q |
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| T |
11859234 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
11859136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 12038032 - 12037924
Alignment:
| Q |
16 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatg |
115 |
Q |
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|||||||||||||| || ||||||| || |||||| ||||| || ||||| ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
12038032 |
gatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaata |
12037933 |
T |
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| Q |
116 |
acaataaca |
124 |
Q |
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||||||||| |
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| T |
12037932 |
acaataaca |
12037924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 11827061 - 11826968
Alignment:
| Q |
21 |
aaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
114 |
Q |
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| T |
11827061 |
aaatttgttcgaattcaaaattcgctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaat |
11826968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 11859104 - 11859049
Alignment:
| Q |
146 |
ttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaac |
201 |
Q |
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||||||| |||||| |||| |||||||||||||||||| || ||||||||||||| |
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| T |
11859104 |
ttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaac |
11859049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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