View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_high_10 (Length: 345)
Name: NF11052_high_10
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_high_10 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 37914457 - 37914241
Alignment:
| Q |
32 |
tttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattattggttctgcttttgtacttttcctct |
131 |
Q |
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| T |
37914457 |
tttgtcaaggtacattttctgtggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattattggttctgcttttgtacttttcctct |
37914358 |
T |
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| Q |
132 |
cttctcaagattcaagttatttatattattggcacttttccacttctaattacttaaactatgtgcccaataactgttattggagaactcttgaagctaa |
231 |
Q |
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| T |
37914357 |
cttctcaagattcaagttagttatattattggcacttttccacttctaattacttaaactatgtgcacaataactgttattggagaactcttgaagctaa |
37914258 |
T |
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| Q |
232 |
ttattgtaaatatttag |
248 |
Q |
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||||||||||||||||| |
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| T |
37914257 |
ttattgtaaatatttag |
37914241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 37869877 - 37869735
Alignment:
| Q |
7 |
gctgacatggcagagttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattatt |
106 |
Q |
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| T |
37869877 |
gctgacttggcagggttgtaacaactttgtgaagca-cattttctgtggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattatt |
37869779 |
T |
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| Q |
107 |
ggttctgcttttgtacttttcctctcttctcaagattcaagtta |
150 |
Q |
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| T |
37869778 |
ggttctgcttttgtacttttcctctcttctcaagattcacgtta |
37869735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 37861705 - 37861530
Alignment:
| Q |
3 |
tcatgctgacatggcagagttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattcaaccaaaatcact-gatta |
101 |
Q |
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| T |
37861705 |
tcatgctgagttggcagggttgtaacaactttgtcaagca-cattttctgtggtccgctagtttcgtacatgagagaattctaccaaaaaaaaacgatta |
37861607 |
T |
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| Q |
102 |
ttattggttctgcttttgtacttttcctctcttctcaagattcaagttattta-tattattggcacttttccacttct |
178 |
Q |
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| T |
37861606 |
tcattggttctgcttttgaac-tttcttctcttctcaagatttacgttagttattattattggcacatttccacttct |
37861530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 37883436 - 37883369
Alignment:
| Q |
115 |
ttttgtacttttcctctcttctcaagattcaagttatttatattattggcacttttccacttctaatt |
182 |
Q |
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| T |
37883436 |
ttttgtacttttcttctcctctcaagattcacgttagttatattattggcacttttccacttctaatt |
37883369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 37914210 - 37914143
Alignment:
| Q |
245 |
ttagataatatatttttcctcatatgcaggtcattttaggtttgaattaagtaaccaaatcttaatat |
312 |
Q |
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| T |
37914210 |
ttagataatatattttttctcagatgcaagtcattttaggtttgaactaagtaaccaaatcttaatat |
37914143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 37883545 - 37883493
Alignment:
| Q |
21 |
gttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacat |
73 |
Q |
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| T |
37883545 |
gttgtaacaactttcttaaggcactttttctgtggtccgctagtttcgtacat |
37883493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 4374 - 4505
Alignment:
| Q |
55 |
gtccgctagtttcgtacatgagagaattcaaccaaaatcactga----ttattattggttctgcttttgtacttttcctctcttctcaagattcaagtta |
150 |
Q |
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||||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| |||||| || ||||||||||||| ||||||||||||||||| |||| |
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| T |
4374 |
gtccgatagtttcgtacataagacaattctaccaaaaacactgactgattattcttggttttgattttgtacttttcttctcttctcaagattcatgtta |
4473 |
T |
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| Q |
151 |
tttatattattggcacttttccacttctaatt |
182 |
Q |
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| T |
4474 |
gttatattattgggacttcttcacttctaatt |
4505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 13473 - 13392
Alignment:
| Q |
3 |
tcatgctgacatggcagagttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattca |
84 |
Q |
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| T |
13473 |
tcatgctgagttggcagggttgtaacaactttgtcaaggcactttttctatggatcactagtttcatacatgagagaattca |
13392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 23801 - 23720
Alignment:
| Q |
3 |
tcatgctgacatggcagagttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattca |
84 |
Q |
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| T |
23801 |
tcatgctgagttggcagggttgtaacaactttgtcaaggcactttttctatggatcactagtttcatacatgagagaattca |
23720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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