View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11052_high_16 (Length: 267)

Name: NF11052_high_16
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11052_high_16
NF11052_high_16
[»] chr1 (6 HSPs)
chr1 (19-256)||(37914479-37914715)
chr1 (127-256)||(37869884-37870011)
chr1 (127-236)||(37861727-37861833)
chr1 (21-183)||(37883657-37883816)
chr1 (19-123)||(37870037-37870148)
chr1 (201-236)||(37883586-37883621)
[»] scaffold0187 (7 HSPs)
scaffold0187 (127-183)||(13566-13622)
scaffold0187 (127-183)||(23894-23950)
scaffold0187 (127-183)||(4163-4219)
scaffold0187 (203-256)||(13476-13530)
scaffold0187 (203-256)||(23804-23858)
scaffold0187 (201-236)||(4255-4290)
scaffold0187 (21-79)||(4060-4118)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 37914715 - 37914479
Alignment:
Q  19 ctctagacttattctttgatttgaagattttaaaaattgagaagaaaccggaagaagacttagccttaccacctcccatgatgattaatgctactgctag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37914715 ctctagacttattctttgatttgaagattttaaaaattgagaagaaacctgaagaagacttagccttaccacctcccatgatgattaatgctactgctag 37914616  T
Q  119 ataagtgatttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgattaacagtgtgaaattaagaatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37914615 ataagtgatttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgattaacagtgtgaaattaagaatc 37914516  T
Q  219 ttataaagcagtggtaaaagaccaatgtaaatggttca 256  Q
    | ||||||||||||| |||||| || ||||||||||||    
T  37914515 tgataaagcagtggt-aaagactaacgtaaatggttca 37914479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 37870011 - 37869884
Alignment:
Q  127 tttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgattaacagtgtgaaattaagaatcttataaag 226  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||    
T  37870011 tttgctagaagtggttgtcttggtttttaaatgacaatgtaatatctcttatttatactacataagtgattaacagtgttaaattaagaatc-tgtaaag 37869913  T
Q  227 cagtggtaaaagaccaatgtaaatggttca 256  Q
    ||||||| ||||||||||||||||||||||    
T  37869912 cagtggt-aaagaccaatgtaaatggttca 37869884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 37861833 - 37861727
Alignment:
Q  127 tttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgattaacagtgtgaaattaagaatcttataaag 226  Q
    |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||   || |||||||||| | | ||| ||||||||||||| ||||||    
T  37861833 tttgctagaaatgattgtcttggttttcaaatgacaatgtaatatctcttattta---tatataagtgattcagaatgtaaaattaagaatctaataaag 37861737  T
Q  227 cagtggtaaa 236  Q
     |||||||||    
T  37861736 gagtggtaaa 37861727  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 37883816 - 37883657
Alignment:
Q  21 ctagacttattctttgatttgaagattttaaaaattgagaagaaaccggaagaagactt----agcc--ttaccacctcccatgatgattaatgctactg 114  Q
    |||||||||||||| ||| |||||   || ||||||||||||||||| |||||||||||     |||  |||||| |||||||| |||||||||          
T  37883816 ctagacttattcttagatgtgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatg------ 37883723  T
Q  115 ctagataagtgatttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttata 183  Q
       | |||||  ||||||||||| |||||| ||| |||| ||||||||||| |||||||||||||||||    
T  37883722 ---gctaagttttttgctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttata 37883657  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 37870148 - 37870037
Alignment:
Q  19 ctctagacttattctttgatttgaagattttaaaaattgagaagaaaccggaagaagactta----gcc--ttaccacctcccatgatgattaatgcta- 111  Q
    |||||||||||||||| ||| |||||    | ||||||||||| ||||| |||||||||||     |||  ||||||||||||||||||||||||||||     
T  37870148 ctctagacttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatgctag 37870049  T
Q  112 ctgctagataag 123  Q
    ||||| ||||||    
T  37870048 ctgctggataag 37870037  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 37883621 - 37883586
Alignment:
Q  201 agtgtgaaattaagaatcttataaagcagtggtaaa 236  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37883621 agtgtgaaattaagaatctgataaagcagtggtaaa 37883586  T

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Target: scaffold0187 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 13622 - 13566
Alignment:
Q  127 tttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttata 183  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  13622 tttgctagaagtgattgtcttgtttttcaaatgacaaggaaatatctcttatttata 13566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 23950 - 23894
Alignment:
Q  127 tttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttata 183  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  23950 tttgctagaagtgattgtcttgtttttcaaatgacaaggaaatatctcttatttata 23894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 4163 - 4219
Alignment:
Q  127 tttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttata 183  Q
    ||||||||||| |||||| ||| |||| ||||||||||| |||||||||||||||||    
T  4163 tttgctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttata 4219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 13530 - 13476
Alignment:
Q  203 tgtgaaattaagaatcttataaagcagtggtaa-aagaccaatgtaaatggttca 256  Q
    ||||||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  13530 tgtgaaattaagaatctaataaaggagtggtaattagaccaatgtaaatggttca 13476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 23858 - 23804
Alignment:
Q  203 tgtgaaattaagaatcttataaagcagtggtaa-aagaccaatgtaaatggttca 256  Q
    ||||||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  23858 tgtgaaattaagaatctaataaaggagtggtaattagaccaatgtaaatggttca 23804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 4255 - 4290
Alignment:
Q  201 agtgtgaaattaagaatcttataaagcagtggtaaa 236  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4255 agtgtgaaattaagaatctgataaagcagtggtaaa 4290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 4060 - 4118
Alignment:
Q  21 ctagacttattctttgatttgaagattttaaaaattgagaagaaaccggaagaagactt 79  Q
    |||||||||||||| ||| |||||   || ||||||||||||||||| |||||||||||    
T  4060 ctagacttattcttagatgtgaagcaattgaaaattgagaagaaacctgaagaagactt 4118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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