View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_high_2 (Length: 540)
Name: NF11052_high_2
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 16695269 - 16694825
Alignment:
| Q |
17 |
caaggtcaacctgattggttggatagtgatgtcaataagggaagattggagtatttctatttcattgtggctggattgggagtgttgaattttggttggt |
116 |
Q |
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| T |
16695269 |
caaggtgaacctgattggttggatagtgatgtcaataagggaaaattggagtatttctatttcattgtggctggattgggagtgttgaattttggttggt |
16695170 |
T |
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| Q |
117 |
tcttgttttgtgcttgtcgttatagatacaagacctttgtgaaaatagaggacataagataagcaagcttttgaattttggaatgctacaaataaagatg |
216 |
Q |
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| T |
16695169 |
tcttgttttgtgcttgtcgttatagatacaagacctttgtgaaaatagaggacataagataagcaagcttttgaattttggaatgctacaaataaagatg |
16695070 |
T |
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| Q |
217 |
aaaggaataaatttgaattggatttgaacttgaagcacttattttgcagcataaaatttttgtttactcctggtttgggtcgatatgactccaccccatg |
316 |
Q |
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| T |
16695069 |
aaaggaataaatttgaattggatttgaacttgaagcacttattttgcagcatacaatttttgtttactcctggtttgggtcgatatgactctaccccatg |
16694970 |
T |
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| Q |
317 |
ttattttatctcttcaacttacaaagtcaaacttaaattgttacaacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataatttc |
416 |
Q |
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| T |
16694969 |
ttattttatctcttcaacttacaaagtcaaacttaaattgttacaacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataatttc |
16694870 |
T |
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| Q |
417 |
tttgttgaacttaatttgtatgtgttgttaagaataaattatgttg |
462 |
Q |
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| T |
16694869 |
tttgttgaacttaatttgtatgtgttgtt-agaataaattatgttg |
16694825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 16694596 - 16694531
Alignment:
| Q |
464 |
cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat |
529 |
Q |
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| T |
16694596 |
cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat |
16694531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 25260670 - 25260749
Alignment:
| Q |
29 |
gattggttggatagtgatgtcaataagggaagattggagtatttctatttcattgtggctggattgggagtgttgaattt |
108 |
Q |
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| T |
25260670 |
gattggcttgatagtgatattaataagggaagattggaatacttttatttcatcattgctggattggcagtgttaaattt |
25260749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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