View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_high_21 (Length: 243)
Name: NF11052_high_21
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_high_21 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 38697710 - 38697477
Alignment:
| Q |
10 |
catcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
109 |
Q |
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| T |
38697710 |
catcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
38697611 |
T |
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| Q |
110 |
cggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatct |
209 |
Q |
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| T |
38697610 |
cggcatcactgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatct |
38697511 |
T |
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| Q |
210 |
gagagagaccatcctgcaaacaatccaagtttac |
243 |
Q |
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| T |
38697510 |
gagagagaccatcctgcaaacaatccaagtttac |
38697477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 38628571 - 38628804
Alignment:
| Q |
10 |
catcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
109 |
Q |
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| T |
38628571 |
catcatcgacatctttgaagtatggtttctacaagacaacatgttcatccgtagaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
38628670 |
T |
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| Q |
110 |
cggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatct |
209 |
Q |
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| T |
38628671 |
cggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcaatct |
38628770 |
T |
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| Q |
210 |
gagagagaccatcctgcaaacaatccaagtttac |
243 |
Q |
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| T |
38628771 |
gagagagaccatcctgcaaacaatccaagtttac |
38628804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 14256293 - 14256401
Alignment:
| Q |
49 |
catgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatga |
148 |
Q |
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| T |
14256293 |
catgtccatctgctgaggcaatagtgagaagtgcaattgacaaagctgtttcactcaatcctggtataggtgctggattgattagaatgcattttcatga |
14256392 |
T |
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| Q |
149 |
ttgctttgt |
157 |
Q |
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| T |
14256393 |
ttgctttgt |
14256401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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