View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_high_5 (Length: 505)
Name: NF11052_high_5
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 486
Target Start/End: Original strand, 39166755 - 39167232
Alignment:
| Q |
9 |
agcacagacactctggcatgaatcgaacatttgacgcttcaccccaaatgagaagatacaatcccatataaagcaacttcctctgctgtatgtctggctg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166755 |
agcacagacactctggcatgaatcgaacatttgacgcttcaccccaaatgagaagatacaatcccatataaagcaacttcctctgctgtatgtctggctg |
39166854 |
T |
|
| Q |
109 |
accttgaggcagtctgtaaaagaacagcataaacacttttaaccataaacaatttcagattttattctttaaattcataaggcaaaagataaaagcgcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39166855 |
accttgaggcagtctgtaaaagaacagcataaacacttttaaccataaacaatttcagattttattctttgaattcataaggcaaaagataaaagcgcaa |
39166954 |
T |
|
| Q |
209 |
atgttcgttgatgctgatatagttatatctcaccgcaaactatgcttccgtcccaagaatttgcaccacgttttgtaattcttaaaaagttctttcatca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166955 |
atgttcgttgatgctgatatagttatatctcaccgcaaactatgcttccgtcccaagaatttgcaccacgttttgtaattcttaaaaagttctttcatca |
39167054 |
T |
|
| Q |
309 |
cagaatcaacagcacgatcatcgagctggaatgataaaatcaaaaggaaagcagagaaaaaacatgtgaattcaattaccgactagtgttcttttgatta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167055 |
cagaatcaacagcacgatcatcgagctggaatgataaaatcataaggaaagcagagaaaaaacatgtgaattcaattaccgactagtgttcttttgatta |
39167154 |
T |
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| Q |
409 |
cagttttggcttttattttgcctgaaacagagaaagtatgaaacagatacatgccttgttaaaaggctcgggtttagg |
486 |
Q |
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| T |
39167155 |
cagttttggcttttattttgcctgaaacagagaaagtatgaaacagatacatgccttgttaaaaggctcgggtttagg |
39167232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 43964244 - 43964353
Alignment:
| Q |
16 |
acactctggcatgaatcgaacatttgacgcttcaccccaaatgagaagatacaatcccatataaagcaacttcctctgctgtatgtctggctgaccttga |
115 |
Q |
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||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||| ||||||||||| |
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| T |
43964244 |
acactctggcatgaagcgaagattggacgcttcaccccatatgagaagatacaagcccatataaagcaactttctctgttgtatctcttgctgaccttga |
43964343 |
T |
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| Q |
116 |
ggcagtctgt |
125 |
Q |
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|| ||||||| |
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| T |
43964344 |
ggaagtctgt |
43964353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 43964464 - 43964521
Alignment:
| Q |
237 |
ctcaccgcaaactatgcttccgtcccaagaatttgcaccacgttttgtaattcttaaa |
294 |
Q |
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||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||| |
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| T |
43964464 |
ctcaccgtaaactatgttttcgtcccaaaaatttgcaccatgttttgtaattcttaaa |
43964521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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