View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11052_high_6 (Length: 453)
Name: NF11052_high_6
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_high_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Complemental strand, 41876571 - 41876134
Alignment:
| Q |
16 |
tcatcaacaagatctcgtacaacaggcctgtgtcatagaaaattcgacaagttaatcgtaagaccacaaaaatttattgcaaaatattttattttaccat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41876571 |
tcatcaacaagatctcgtacaacaggcctgtgtcatagaaaattcgacaagttaatcgtaagaccacaaaaatttattgcaaaatatttgattttaccat |
41876472 |
T |
|
| Q |
116 |
gtaaaatttccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgcatcatcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876471 |
gtaaaatttccgagacatgctcggagcccatctgctatggtattgacctcaggcaatgttattatcctcccagctgctttagattgcgctgcatcatcag |
41876372 |
T |
|
| Q |
216 |
ctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaattttcatttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876371 |
ctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaattttcatttt |
41876272 |
T |
|
| Q |
316 |
gttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttgatggattaaaataaaaatgagaacaaaccacttataggtacta |
415 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41876271 |
gttggaaaatcgagaagagaatactaaaatttatgaaaattttaaaacatttggttgatggattaacataaaaatgagaacaaaccacttataggtacta |
41876172 |
T |
|
| Q |
416 |
caagagtatcaatcagaggggcttgttccaaaagctcc |
453 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41876171 |
caagagtatcaatctgaggggcttgttccaaaagctcc |
41876134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 109 - 453
Target Start/End: Original strand, 40867588 - 40867932
Alignment:
| Q |
109 |
ttaccatgtaaaatttccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgca |
208 |
Q |
| |
|
||||||||| |||| ||| ||| ||||||| |||||||| ||||| |||||| ||| |||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
40867588 |
ttaccatgtgaaatctccaagaaatgctcgtagcccgtcagctatagtattggtctcgggcaatgttattatccttccagctgctttagattgtgctgcg |
40867687 |
T |
|
| Q |
209 |
tcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaattt |
308 |
Q |
| |
|
||||| | ||||| || |||||||||||||| ||||| | |||||| || | ||||||||| ||||||||||| ||| || |||||| ||| || ||| |
|
|
| T |
40867688 |
tcatcggcccctttaggttcagcagccaaaatacgaatggccgggttgatagacttggcagccaatgctactcctgatatcaaaccacctcctgcagttt |
40867787 |
T |
|
| Q |
309 |
tcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaaca-tttggttgatggattaaaataaaaatgagaacaaaccacttat |
407 |
Q |
| |
|
||| |||||||||||||| ||||| |||||| ||||| ||| ||||||| ||||| ||||| |||||| || | || |||| | |||||||||||||| |
|
|
| T |
40867788 |
tca-tttgttggaaaatcaagaaggggataccaaaatcaatgcaaattttgaaacattttggatgatggtttgacatcaaaaagcaaacaaaccacttat |
40867886 |
T |
|
| Q |
408 |
aggtactacaagagtatcaatcagaggggcttgttccaaaagctcc |
453 |
Q |
| |
|
||||| ||||| ||||| | ||||||||||||||| ||||||| |
|
|
| T |
40867887 |
tggtaccacaagtgtatctagttgaggggcttgttccagaagctcc |
40867932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 174 - 425
Target Start/End: Original strand, 24817434 - 24817687
Alignment:
| Q |
174 |
ttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
273 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
| T |
24817434 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24817533 |
T |
|
| Q |
274 |
tgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttga |
373 |
Q |
| |
|
||||| ||| | | |||||| |||||| ||| | ||||||||| |||||||| |||||||||||||| | |||| ||||| | |||||||| | ||| |
|
|
| T |
24817534 |
tgctattcctgctatcataccgccgcctgcaagtatcattttgtaacaaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatga |
24817633 |
T |
|
| Q |
374 |
tggattaaaataaaaa--tgagaacaaaccacttataggtactacaagagtatc |
425 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
24817634 |
tggattgacgtaaaaaagagagaacaaaccacttattggtactacaagtgtatc |
24817687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 174 - 425
Target Start/End: Original strand, 24800358 - 24800611
Alignment:
| Q |
174 |
ttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
273 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
| T |
24800358 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24800457 |
T |
|
| Q |
274 |
tgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttga |
373 |
Q |
| |
|
||||| ||| | | |||||| || ||| ||| | ||||||||| |||||||| |||||||||||||| | |||| ||||| | |||||||| | ||| |
|
|
| T |
24800458 |
tgctattcctgctatcataccgccacctgcaagtatcattttgtaacaaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatga |
24800557 |
T |
|
| Q |
374 |
tggattaaaataaaaa--tgagaacaaaccacttataggtactacaagagtatc |
425 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
24800558 |
tggattgacgtaaaaaagagagaacaaaccacttattggtactacaagtgtatc |
24800611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 282
Target Start/End: Original strand, 9735930 - 9736090
Alignment:
| Q |
124 |
tccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgc--atcatcaactcctt |
221 |
Q |
| |
|
||||||| ||||||| |||| ||||||||| |||| | |||||||| | |||||||||||| | || |||||||||| ||| ||||||| |||||| |
|
|
| T |
9735930 |
tccgagaaatgctcgaagcctgtctgctataatatttatctcaggcaattttattatcctccttgttgtcttagattgcgatgcatatcatcagctcctt |
9736029 |
T |
|
| Q |
222 |
ttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcc |
282 |
Q |
| |
|
| |||||||| ||||||| | ||||| || |||||| || |||||||||| ||||||||| |
|
|
| T |
9736030 |
tatgctcagcaaccaaaatacaaatagccgagttaatagctttggcagctattgctactcc |
9736090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 9735801 - 9735855
Alignment:
| Q |
19 |
tcaacaagatctcgtacaacaggcctgtgtcatagaaaattcgacaagttaatcg |
73 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
9735801 |
tcaacaagatcttgtacaataggcctgtgtcacagaaaactcgacaaattaatcg |
9735855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University