View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_1 (Length: 765)
Name: NF11052_low_1
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 340 - 747
Target Start/End: Original strand, 35733260 - 35733645
Alignment:
| Q |
340 |
atagtatcataccatggatattgtgaagataaagaaccggattcaatgttttaaacaacaagaaattgatagttggattaagagttagttttacccaatt |
439 |
Q |
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| T |
35733260 |
atagtatcataccatggatattgtgaagataaagaaccggattcaatgttttaaacaacaagaaattgatagttggattaagagttagttttacccaatt |
35733359 |
T |
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| Q |
440 |
gcaatgtcaatatcccaacttactccaacaaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcagccagag |
539 |
Q |
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| T |
35733360 |
gcattgtcaatat-ccaacttactccaacaaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcag------ |
35733452 |
T |
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| Q |
540 |
ccattttgatgtatgcacaatgcacaatgcacaatacgattaaaaagtttgagcaaagaaaataaggtaggatacatacaatnnnnnnngcaacctctct |
639 |
Q |
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| T |
35733453 |
-------gatgt-------atgcacaatgcacaatacgattaaaaagtttgagcaaagaaaataaggtaggatacatacaat-aaaaaagcaacctctct |
35733537 |
T |
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| Q |
640 |
tcaagttcactgagccagtaaatcacaaagacactcccnnnnnnnttaaattgtagcaatcatacactttattggaatttacataagtcatttgttaagg |
739 |
Q |
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| T |
35733538 |
tcaagttcactgagccagtaaatcacaaagacactcccaaaaaaattaaattgtagcaatcatacactttattggaatttacataagtcatttgttaagg |
35733637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 35732781 - 35733092
Alignment:
| Q |
16 |
agagaccagtataaccattggctggtataaaatcaatatattattgcaaaatataaaataagggaaggattatataccatgaacaagaatcatcctcgag |
115 |
Q |
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| T |
35732781 |
agagacccgtataaccattggctggtataaaatcaatatattattgcaaaatataaaataagggaaggattatataccatgaacaacaatcatcctcgag |
35732880 |
T |
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| Q |
116 |
aaagaatgtcaaaatagcaaccatctgccatagcccatatgataatcaatggttaataaacatggaataccgttgaaatttaatatatatattcaaaaat |
215 |
Q |
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| T |
35732881 |
aaagaatgtcaaaatagcaaccatctg-------ccatatgataatcaatggttaataaacatggaataccgttgaaatttaatatatatattcaaaaat |
35732973 |
T |
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| Q |
216 |
taataagtagcaacaataccgcaaggtaaggagcaatcctactatcctagagtaatggtctgcaaatccagtgtaaaatctcaatactcctccttcttgg |
315 |
Q |
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| T |
35732974 |
taataagtagcaacaataccgcaaggtaaggagca--------atcctagagtaatggtccgcaaatccagtgtaaaatctcaatactcctccttcttgg |
35733065 |
T |
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| Q |
316 |
aaggtttgagtaatacaatgaaaaata |
342 |
Q |
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| T |
35733066 |
aaggtttgagtaatacaatgaaaaata |
35733092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 35755508 - 35755577
Alignment:
| Q |
351 |
ccatggatattgtgaagataaagaaccggattcaatgttttaaacaacaagaaattgatagttggattaag |
421 |
Q |
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| T |
35755508 |
ccatggatattgc-aagataaagaacgggattcaacgtttcaaagaacaatgaattgatagttggattaag |
35755577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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