View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_12 (Length: 317)
Name: NF11052_low_12
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 38629118 - 38628825
Alignment:
| Q |
18 |
agaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgca |
117 |
Q |
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| T |
38629118 |
agaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgca |
38629019 |
T |
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| Q |
118 |
ctgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
38629018 |
ctgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgatggtactgagtagtctattctgccgccac |
38628919 |
T |
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| Q |
218 |
taactttgcgagcaccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgcctttgcttc |
311 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
38628918 |
taactttgcgagcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttc |
38628825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 38697163 - 38697456
Alignment:
| Q |
18 |
agaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697163 |
agaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgca |
38697262 |
T |
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| Q |
118 |
ctgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccac |
217 |
Q |
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| T |
38697263 |
ctgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgatggtactgagtagtctattctgccgccac |
38697362 |
T |
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| Q |
218 |
taactttgcgagcaccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgcctttgcttc |
311 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
38697363 |
taactttgcgagcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttc |
38697456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14257608 - 14257539
Alignment:
| Q |
18 |
agaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaacctttt |
87 |
Q |
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| T |
14257608 |
agaacaatgtgatacaccaattgaatgtgctcctgagagtgtaaccatttcatcaattgacaaacctttt |
14257539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 310
Target Start/End: Original strand, 30652158 - 30652335
Alignment:
| Q |
132 |
tggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcgagca |
231 |
Q |
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||||| ||||||||| ||||||| |||||||| |||||||||||| || ||| || ||||||||||||||| | |||||||||||||||| | |
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| T |
30652158 |
tggtagattttgtgttgcttcgtcaaagatagaggttcgaccatctctatgtactgatgctactgagtagtctatgtcgctaccactaactttgcgagta |
30652257 |
T |
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| Q |
232 |
ccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgcctttgctt |
310 |
Q |
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| |||||||||| |||| ||||||||||||||| | || ||||| |||||||| ||||||||||||| ||| |||| |
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| T |
30652258 |
ctgtctcgagcttgaaaaa-aagaatgtctgcacacaagacagttttaggacatgcggcctctatttgtgtcttagctt |
30652335 |
T |
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