View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11052_low_13 (Length: 316)

Name: NF11052_low_13
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11052_low_13
NF11052_low_13
[»] chr5 (3 HSPs)
chr5 (28-297)||(26110707-26110976)
chr5 (246-297)||(37337342-37337393)
chr5 (246-294)||(11300764-11300812)
[»] chr4 (3 HSPs)
chr4 (28-297)||(12094638-12094906)
chr4 (62-229)||(27749192-27749359)
chr4 (246-294)||(9451264-9451311)
[»] chr8 (4 HSPs)
chr8 (246-297)||(23828362-23828413)
chr8 (246-297)||(42315361-42315412)
chr8 (246-294)||(45244285-45244333)
chr8 (207-256)||(7348425-7348474)
[»] chr6 (2 HSPs)
chr6 (246-297)||(31665629-31665680)
chr6 (246-297)||(15296164-15296215)
[»] chr3 (4 HSPs)
chr3 (244-293)||(37605419-37605468)
chr3 (246-297)||(1529184-1529235)
chr3 (204-238)||(13531205-13531239)
chr3 (246-294)||(22424371-22424418)
[»] chr1 (3 HSPs)
chr1 (244-293)||(46555525-46555574)
chr1 (246-297)||(15700740-15700790)
chr1 (246-294)||(22964029-22964076)
[»] chr7 (1 HSPs)
chr7 (204-256)||(7853798-7853850)
[»] chr2 (2 HSPs)
chr2 (246-297)||(32281505-32281555)
chr2 (244-294)||(28926097-28926146)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 28 - 297
Target Start/End: Complemental strand, 26110976 - 26110707
Alignment:
Q  28 catcaatatgcatggagaaggctaaatggctcacgccatttaatgtaccaagggaagatggaaagccattggaaaaggcattaagtttaatgggggaatt 127  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  26110976 catcaatatgcatggaggaggctaaatggctcacgccatttaatgtaccaagggaagatggaaagctattggaaaagacattaagtttaatgggggaatt 26110877  T
Q  128 ttgaaaatgcaccgtgtgatgtgttgtgtgatagcaaagagaagagcattaagtgtagataatcaatagctcacaatgaatggcgcctaaatgatcagca 227  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  26110876 ttgaaaatgcatcgtgtgatgtgttgtgtcatagcaaagagaagagcattaagtgtagataatcaatggctcacaatgaatggcgcctaaatgatcaaca 26110777  T
Q  228 tccaatggcttagaaaagtggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26110776 tccaatggcttagaaaagtggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaac 26110707  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 37337393 - 37337342
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaac 37337342  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 11300764 - 11300812
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgacca 294  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  11300764 tggagggaaaatattaggttaaaaattagggttacttatagcttcacca 11300812  T

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Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 12094638 - 12094906
Alignment:
Q  28 catcaatatgcatggagaaggctaaatggctcacgccatttaatgtaccaagggaagatggaaagccattggaaaaggcattaagtttaatgggggaatt 127  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094638 catcaatatgcatggaggaggctaaatggctcacgccatttaatgtaccaagggaagatggaaagccattggaaaaggcattaagtttaatgggggaatt 12094737  T
Q  128 ttgaaaatgcaccgtgtgatgtgttgtgtgatagcaaagagaagagcattaagtgtagataatcaatagctcacaatgaatggcgcctaaatgatcagca 227  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  12094738 ttgaaaatgcatcgtgtgatgtgttgtgtgatagcaaagagaagagcattaagtgtagataatcaatggctcacaacgaatggtgcctaaatgatcagca 12094837  T
Q  228 tccaatggcttagaaaagtggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  12094838 tccaatggcttagaaaagtggagggaaaatattaggtt-aaaattagggtttctaatagcttgaccaaac 12094906  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 27749192 - 27749359
Alignment:
Q  62 gccatttaatgtaccaagggaagatggaaagccattggaaaaggcattaagtttaatgggggaa-ttttgaaaatgcaccgtgtgatgtgttgtgtgata 160  Q
    ||||||||||||||||||| ||  ||||||||||||| |||||||||||||| |||||  |||| ||||||||||||| |||||| ||||||  || |||    
T  27749192 gccatttaatgtaccaaggaaat-tggaaagccattgcaaaaggcattaagtgtaatgtaggaaattttgaaaatgcatcgtgtgctgtgttacgttata 27749290  T
Q  161 gcaaagagaagagcattaagtgtagataatcaatagctcacaatgaatggcgcctaaatgatcagcatc 229  Q
    ||||| ||| ||||||||| ||||||  |||||  | | |   |||||||||||||||| |||||||||    
T  27749291 gcaaacagatgagcattaaatgtagaagatcaacggttgatgttgaatggcgcctaaataatcagcatc 27749359  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 9451311 - 9451264
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgacca 294  Q
    |||||||||||||||||||| ||||||||||| |  |||||||||||||    
T  9451311 tggagggaaaatattaggtt-aaaattagggtgaacaatagcttgacca 9451264  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 23828413 - 23828362
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23828413 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 23828362  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 42315412 - 42315361
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaac 42315361  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 45244285 - 45244333
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgacca 294  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45244285 tggagggaaaatattaggttaagaattagggttactaatagcttgacca 45244333  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 7348474 - 7348425
Alignment:
Q  207 atggcgcctaaatgatcagcatccaatggcttagaaaagtggagggaaaa 256  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  7348474 atggcgcctaaatgttcatgatccaatggcttagaaaagtggagggaaaa 7348425  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 31665629 - 31665680
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaac 31665680  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 15296215 - 15296164
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaac 15296164  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 37605419 - 37605468
Alignment:
Q  244 agtggagggaaaatattaggttaaaaattagggttactaatagcttgacc 293  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37605419 agtggagggaaaatattaggttaagaattagggttactaatagcttgacc 37605468  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 1529235 - 1529184
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  1529235 tggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaac 1529184  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 13531239 - 13531205
Alignment:
Q  204 tgaatggcgcctaaatgatcagcatccaatggctt 238  Q
    |||||||||||||||||||||||||| ||||||||    
T  13531239 tgaatggcgcctaaatgatcagcatctaatggctt 13531205  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 22424371 - 22424418
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgacca 294  Q
    |||||||||||||||||||| ||||||||||| |  |||||||||||||    
T  22424371 tggagggaaaatattaggtt-aaaattagggtgaacaatagcttgacca 22424418  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 46555574 - 46555525
Alignment:
Q  244 agtggagggaaaatattaggttaaaaattagggttactaatagcttgacc 293  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46555574 agtggagggaaaatattaggttaagaattagggttactaatagcttgacc 46555525  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 15700790 - 15700740
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  15700790 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaac 15700740  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 22964076 - 22964029
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgacca 294  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||||    
T  22964076 tggagggaaaatattaggttagaa-ttagggttaccaatagcttgacca 22964029  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 7853850 - 7853798
Alignment:
Q  204 tgaatggcgcctaaatgatcagcatccaatggcttagaaaagtggagggaaaa 256  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  7853850 tgaatggcgcctaaatgatcagcatccaatggcttgcaaaagtggagggaaaa 7853798  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 32281555 - 32281505
Alignment:
Q  246 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaac 297  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  32281555 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaac 32281505  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 28926146 - 28926097
Alignment:
Q  244 agtggagggaaaatattaggttaaaaattagggttactaatagcttgacca 294  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  28926146 agtggagggaaaa-attaggttaagaattagggttactaatagcttgacca 28926097  T

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