View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_14 (Length: 316)
Name: NF11052_low_14
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 44017402 - 44017113
Alignment:
| Q |
1 |
agttaaggtacattctggtatatgtctaagataacaaatagaaagctttgtccattcctttttgaccattctctcatctctattatctcccttcttaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017402 |
agttaaggtacattctggtatatgtctaagataacaaatagaaagctttgtccattcctttttgaccattctctcatctctattatctcccttcttaaac |
44017303 |
T |
|
| Q |
101 |
atactacttgacactatctctttttgtttcacatgcttttgtttaaaacgtttgtgtgaaacttaagcatcatgcatgtgctctcctaaactagtagtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017302 |
atactacttgacactatctctttttgtttcacatgcttgtgtttaaaacgtttgtgtgaaacttaagcatcatgcatgtgctctcctaaactagtagtct |
44017203 |
T |
|
| Q |
201 |
tttattaccttcaccttcaccttcaccctcatcttctacattaatctccgactccaagtaaagccaccattttcacaatcaaaaatggaaaatatt |
296 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44017202 |
tttatcaccttcacctt------caccctcatcttctacattaatctccaactccaagtaaagtcaccattttcacaatcaaaaatggaaaatatt |
44017113 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 31037093 - 31037218
Alignment:
| Q |
54 |
attcctttttgaccattctctc--atctctattatctcccttcttaaacatac---tacttgacactatctctttttgtttcacatgcttttgtttaaaa |
148 |
Q |
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|||||||||||| ||||||||| | ||||||| ||| |||||||||| ||| ||||||||| |||||| ||| | |||||| || ||| |||| |
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| T |
31037093 |
attcctttttgaacattctctctcagctctattttcttccttcttaaagataacaatacttgacaatatctcctttcatgtcacattctagtgtcgaaaa |
31037192 |
T |
|
| Q |
149 |
cgtttgtgtgaaacttaagcatcatg |
174 |
Q |
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| |||||||||||| ||||||||||| |
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| T |
31037193 |
catttgtgtgaaacctaagcatcatg |
31037218 |
T |
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