View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_18 (Length: 267)
Name: NF11052_low_18
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_18 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 2856069 - 2855829
Alignment:
| Q |
18 |
aatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataactct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2856069 |
aatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttccgaaccttccttaaatcccaaaatacacataactct |
2855970 |
T |
|
| Q |
118 |
tttcaactccattgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2855969 |
tttcaactccattgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaat |
2855870 |
T |
|
| Q |
218 |
tcagaaaactccttcgaactatatttttcttcaagttcatc |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2855869 |
tcagaaaactccttcgaactatatttttcttcaagttcatc |
2855829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 69 - 258
Target Start/End: Complemental strand, 2851926 - 2851732
Alignment:
| Q |
69 |
aattctcaacttctgaaccttccttaaatcccaaaatacacataactcttttcaactccattgcatcaataaaaccatctttgttctcatcaaaaaca-- |
166 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| || |
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| T |
2851926 |
aattttcaacttctaaaccttccttaaatcccaaaatacacataactctttgcaactccattgcatcaat--aaccatctttgttctcattaaaaccata |
2851829 |
T |
|
| Q |
167 |
-----tcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaattcagaaaactccttcgaactatatttttcttcaagttcatc |
258 |
Q |
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||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||| |
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| T |
2851828 |
aaaattcaaaagtcatcttcacttcctctaaacatggttcattctcatcaaacaattcaagaagctcctttgaaccatatttttcttcaagttcatc |
2851732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 258
Target Start/End: Complemental strand, 8216341 - 8216118
Alignment:
| Q |
35 |
tgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataactcttttcaactccattgcat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
8216341 |
tgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataacatttttcaactccattgaat |
8216242 |
T |
|
| Q |
135 |
caataaaaccatctttgttctcatcaaaaacatcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaattcagaaaactccttcga |
234 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8216241 |
caataaaaccatctttgttctcatcaaaaacatcaaaagccatctaaacttcctccaaacttggctcattctcatcaaacaattcagaaaactccttcga |
8216142 |
T |
|
| Q |
235 |
actatatttttcttcaagttcatc |
258 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
8216141 |
actatatttttcttcaagttcatc |
8216118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 10477988 - 10477748
Alignment:
| Q |
18 |
aatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataactct |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||| |
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|
| T |
10477988 |
aatcaattcttccatcttggttttcatcaaaattcttgatcatcttctgacaattcttaacttctaaaccttcattcaatcccaaaatacacataactct |
10477889 |
T |
|
| Q |
118 |
tttcaactccattgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaat |
217 |
Q |
| |
|
|| ||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10477888 |
ttgcaattcctttgcatcaataaatccatctttgttctcatcaaaaacgtcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaat |
10477789 |
T |
|
| Q |
218 |
tcagaaaactccttcgaactatatttttcttcaagttcatc |
258 |
Q |
| |
|
||||||| || || |||| ||||||||| ||||||||||| |
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|
| T |
10477788 |
tcagaaagttcatttgaaccatatttttcatcaagttcatc |
10477748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 52971112 - 52971349
Alignment:
| Q |
18 |
aatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataactct |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | | |||||||| || || ||||||| |||||| |||| || |||||||||||| | |||||| |
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| T |
52971112 |
aatcaattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatcccaaaataacaagaactct |
52971211 |
T |
|
| Q |
118 |
tttcaactccattgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaat |
217 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||| | |
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| T |
52971212 |
ttgcaactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactcctccaaactaggctcattctcttcaaacact |
52971311 |
T |
|
| Q |
218 |
tcagaaaactccttcgaactatatttttcttcaagttc |
255 |
Q |
| |
|
||| ||| |||||| |||| ||| |||||||||||||| |
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| T |
52971312 |
tcacaaagctccttggaaccatacttttcttcaagttc |
52971349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 52967223 - 52967369
Alignment:
| Q |
20 |
tcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatccc--aaaatacacataactct |
117 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| || ||||| ||||| ||||||| |||||| |||| || || ||| |||||| | |||||| |
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|
| T |
52967223 |
tcaattctttcatcttgattttcatcaaaattcttgataatcttttgacatttctcaaattctgatccttgtttgaaccccaaaaaatagcaagaactct |
52967322 |
T |
|
| Q |
118 |
tttcaactccattgcatc-aataaaaccatctttgttctcatcaaaa |
163 |
Q |
| |
|
|| ||||||| |||||| || ||||||||||||||| ||||||||| |
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| T |
52967323 |
ttgcaactcctatgcatcaaacaaaaccatctttgttgtcatcaaaa |
52967369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 52967362 - 52967449
Alignment:
| Q |
165 |
catcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaattcagaaaactccttcgaactatatttttcttcaagtt |
254 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||||| | ||||| |||| ||| |||||| |||||||| |||| ||||||| |
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|
| T |
52967362 |
catcaaaagccatcttcacctcct-caagtttggctcattctcctaaaacacttcacaaacctcctt-gaactatacttttactcaagtt |
52967449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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