View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_19 (Length: 256)
Name: NF11052_low_19
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 26110985 - 26111219
Alignment:
| Q |
11 |
gtttccaacgtccactatcaagcacttaagtatctgtaaatatgtggtttctaaacaagcaacaattacaaagcacctcttcaatttcccagtcaagact |
110 |
Q |
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| T |
26110985 |
gtttccaacgtccactatcaagcacttaaccatctgtaaatatgtggtttctaaacaagcaacaattacaaagcacctcttcaatttcccagtcaagact |
26111084 |
T |
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| Q |
111 |
tagaataactgaataaccaatcaatgtgccggacattttctctttcatgtgttatatagcatgtacatttccaatgaagcaaacccttctctcttcttct |
210 |
Q |
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| T |
26111085 |
tagaataaccgaataagcaatcaatgtaccggacattttctctttcatgtgttatataacatgtacatttccaattaagcaaacccttctctcttcttct |
26111184 |
T |
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| Q |
211 |
acttccaagtctgccaacctctccgtccactctct |
245 |
Q |
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| T |
26111185 |
acttccaagtctgccaacctctccatccactctct |
26111219 |
T |
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Back To:
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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 12094629 - 12094559
Alignment:
| Q |
11 |
gtttccaacgtccactatcaagcacttaagtatctgtaaatatgtggtttctaaacaagcaacaattacaa |
81 |
Q |
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| T |
12094629 |
gtttccaacgtccactatcaagcacttaaccatctgtaaatatgtggtttctaaacaagaaacaattacaa |
12094559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 12094561 - 12094500
Alignment:
| Q |
182 |
caatgaagcaaacccttctctcttcttctacttccaagtctgccaacctctccgtccactct |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12094561 |
caatgaagcaaacccttctctcttcttctacttccaagtctgccaacctctccgtcccctct |
12094500 |
T |
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