View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_3 (Length: 521)
Name: NF11052_low_3
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Complemental strand, 38142853 - 38142360
Alignment:
| Q |
19 |
ggatggatgcactttttctgctcatacaaggttggtcagcatgccctgttgaagtctcaagagctcagtcaaatgcagctgcatatgctattcctttact |
118 |
Q |
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| T |
38142853 |
ggatggatgcactttttctgctcatacaaggttggtcagcatgccctgttgaagtctcaagagatcagtcaaatgcagctgcatatgctattcctttact |
38142754 |
T |
|
| Q |
119 |
gcagaacttaatccaatttggtccggttctattttttgagaaggcggaatttatattggtgatgatcgtcaagcgtggtaacaatatgagacagtgtgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142753 |
gcagaacttaatccaatttggtccggttctattttttgagaaggcggaatttatattggtgatgatcgtcaagcgtggtaacaatatgagacagtgtgtt |
38142654 |
T |
|
| Q |
219 |
cgaaatcaaggtaagattacactcgaggcgaaccaaggtaannnnnnngtttatttatgttttcacatttatctatctgacaacctaaaatgtttaaatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38142653 |
ggaaatcaaggtaagattacactcgaggcgaaccaaggtaatttttttgtttatttatgttttcacatttatctatccgacaacctaaaatgtttaaatc |
38142554 |
T |
|
| Q |
319 |
atctaatt-aatcacttatagattgattatgtcaattcataattgattaattaattagacacttgagtctaatgatgcagattattaaatatgtttaaac |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142553 |
atctaattaaatcacttatagattgattatgtcaattcataattgattaattaattagacacttgagtctaatgatgcagattattaaatatgtttaaac |
38142454 |
T |
|
| Q |
418 |
caagtaacattatgttttatactcatgctgatcaggttgtctcaactgatcctaatccagaatgggatgagaggtttacatacatggtcctttg |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142453 |
caagtaacattatgttttatactcatgctgatcaggttgtctcaactggtcctaatccagaatgggatgagaggtttacatacatggtcctttg |
38142360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 38157271 - 38157160
Alignment:
| Q |
22 |
tggatgcactttttctgctcatacaaggttggtcagcatgccctgttgaagtctcaagagctcagtcaaatgcagctgcatatgctattcctttactgca |
121 |
Q |
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|||| ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
38157271 |
tggaagcactttttcttctcagacaagcttggtcagcatgccctgctgaagtctcaagagctcagtcaattgcagctgcagatgctattccttttctgca |
38157172 |
T |
|
| Q |
122 |
gaacttaatcca |
133 |
Q |
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| T |
38157171 |
gtacttaatcca |
38157160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 38157099 - 38157054
Alignment:
| Q |
173 |
attggtgatgatcgtcaagcgtggtaacaatatgagacagtgtgtt |
218 |
Q |
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| T |
38157099 |
attggtggtgatcgtcaagcgtggtaacaatatgagacagtctgtt |
38157054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 39781128 - 39781039
Alignment:
| Q |
24 |
gatgcactttttctgctcatacaaggttggtcagcatgccctgttgaagtctcaagagctcagtcaaatgcagctgcatatgctattcct |
113 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| | ||||| |||||||| ||||| | ||||| ||| ||||||||||| |
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| T |
39781128 |
gatgcactttttctgctcaggcaagcttggtcagcatgcccagcagaagtttcaagagcccagtccatagcagccgcagatgctattcct |
39781039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 25189444 - 25189476
Alignment:
| Q |
339 |
attgattatgtcaattcataattgattaattaa |
371 |
Q |
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| T |
25189444 |
attgattatttcaattcataattgattaattaa |
25189476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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