View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_4 (Length: 521)
Name: NF11052_low_4
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 36423781 - 36423285
Alignment:
| Q |
18 |
aagcattccttggacaatcatttaaagggtctaaaggcattgcttgcaaaccaaatccatactcaccagcatccatgtatgtcttaaaataccatccatc |
117 |
Q |
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| T |
36423781 |
aagcatttcttggacaatcatttaaagggtctaaaggcattgcttgcaaaccaaatccatactcaccagcatccatgtatgtcttaaaataccatccatc |
36423682 |
T |
|
| Q |
118 |
agtaggatccatataaggcacaaaaagttcagaagtgaaccctttgtaaataacatttctcatctctaatgtatctggatctctcactttagcttgagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423681 |
agtaggatccatataaggcacaaaaagttcagaagtgaaccctttgtaaataacatttctcatctctaatgtatctggatctctcactttagcttgagaa |
36423582 |
T |
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| Q |
218 |
ataatggttccagctctagggtcgggtttgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttttggttgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423581 |
ataatggttccagctctagggtcgggtttgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttttggttgtt |
36423482 |
T |
|
| Q |
318 |
ccaaggaaattggatttatcaagttcaactctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatgtttagtcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423481 |
ccaaggaaattggatttatcaagttcaactctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatgtttagtcc |
36423382 |
T |
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| Q |
418 |
attatctgtaatggacacaacctctctcttatccatatcaaccaacacagttaaaccttctatcggtttcatgtagaaattgacagtgcctttgctt |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423381 |
attatctgtaatggacacaacctctctcttatccatatcaaccaacacagttaaaccttctatcggtttcatgtagaaattgacagtgcctttgctt |
36423285 |
T |
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