View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_8 (Length: 367)
Name: NF11052_low_8
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 2020397 - 2020736
Alignment:
| Q |
18 |
ttacagtaggtgttttagttagttagtgagctacaatctgtatagaaagtcaaagacttttcttgttgttttccagatcttttgtgctgtgaatttatgg |
117 |
Q |
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| T |
2020397 |
ttacagtaggtgttttagttagttagtgtgctacaatctgtatagaaagtcaaagacttttcttgttgttttccagatcttttgtgctgtgaatttatgg |
2020496 |
T |
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| Q |
118 |
aggcttcctttttggattgtttccttgaagatgtagtagtaagatgcatgggtacattaagtataagtataacacattcatatttatattagtacttcac |
217 |
Q |
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| T |
2020497 |
aggcttcctttttggattgtttccttgaagatgtattagtaagatgcatgggtacattaagtataagtataatacattcatatttatattagtacttcac |
2020596 |
T |
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| Q |
218 |
atcatatcttgaggtgcaagtttggtagtaagagattaatcttgtaacctcaagtgttgagttcgaatttcctcaagaaacagttgtaaaattatcagcg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2020597 |
atcatatcttgaggtgcaagtttggtagtaagagattaatcttgtaacctcaagtgttgagttagaatttcctcaagaaacagttgtaaaattatcagcg |
2020696 |
T |
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| Q |
318 |
atgcaactttaattaataaaaacaatacttcacatctctg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2020697 |
atgcaactttaattaataaaaacaatacttcacatctctg |
2020736 |
T |
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